Transcription Factor
| Accessions: | T127993_1.02 (CISBP 1.02), Q9FY93 (JASPAR 2024), T23394 (AthalianaCistrome v4_May2016) |
| Names: | NAC083, T127993_1.02;, ANAC083, NAC domain-containing protein 83, NAC83_ARATH, Protein VND-INTERACTING 2, AT5G13180, T23394; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:NAC/NAM, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 252 |
| Pfam Domains: | 14-138 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MDNVKLVKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLP 60 61 GNLEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYK 120 121 GKPPHGSRTDWIMHEYRLSSSPPSSMGPTQNWVLCRIFLKKRAGNKNDDDDGDSRNLRHN 180 181 NNNNSSDQIEIITTDQTDDKTKPIFFDFMRKERTTDLNLLPSSPSSDHASSGVTTEIFSS 240 241 SDEETSSCNSFR |
| Interface Residues: | 77, 82, 84, 93, 95, 97, 119, 123, 124, 125, 128 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M1406_1.02 wyACGyAAcc MA1043.1 wyACGyAAcc M0640 TTrCkTgtwwtwyACGywA M0649 CKTrwrrwacAmGyA MA1043.2 yACGyAA |
| Binding Sites: | MA1043.1.1 MA1043.1.10 MA1043.1.11 MA1043.1.12 MA1043.1.13 MA1043.1.14 MA1043.1.15 MA1043.1.16 MA1043.1.17 MA1043.1.18 MA1043.1.19 MA1043.1.2 MA1043.1.20 MA1043.1.3 MA1043.1.4 MA1043.1.5 MA1043.1.6 MA1043.1.7 MA1043.1.8 MA1043.1.9 MA1043.2.1 MA1043.2.10 MA1043.2.11 MA1043.2.12 MA1043.2.13 MA1043.2.14 MA1043.2.15 MA1043.2.16 MA1043.2.17 MA1043.2.18 MA1043.2.19 MA1043.2.2 MA1043.2.20 MA1043.2.3 MA1043.2.4 MA1043.2.5 MA1043.2.6 MA1043.2.7 MA1043.2.8 MA1043.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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