Transcription Factor

						

			
Accessions: T017943_1.02 (CISBP 1.02)

			
Names: NCU05970, T017943_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 497
Pfam Domains:   382-449 Helix-loop-helix DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MDPNTLRHLEYFSVPNHQTVNPVDQSYNLSGSTSTQSPTLWGTAPSLEANHSGMNSTATT   60
  61 TMSLDSLSQTSPATAFTGMSSHPSMTRRPSMYGNHTGMPSSKSSRTREGHERKRTRLDSE  120
 121 LSPFDEPDYWLQFDNDDNFDDLSEITEPPRQDHKGKGRAPQLSQQQEQQQQQQQQRRRST  180
 181 AHSMATTAPTHRRTAGTLKSEDYMEDSALDNALSEDERAMSLNLAEQLSKIDTAPPQEVP  240
 241 PREGLYSTPLSWERPQPGLRMDSLIGLNQQALNEAEQRRLIAIAMNPGPSMGGLGSNINL  300
 301 NFGDMATGFNSGFGSSYASSSMGGGQMPRPVSPPRASTSSQSRPAPARPPHKHGSISEKS  360
 361 SERMGSGDKHRKVEEKHKIGDRTAHNDIERKYRTNLKDKIAELREAVPALHTISEAGGVE  420
 421 DDGSQNSRAPKVSKGTILTKATEYIHQLERRNKQITMEHRELSRKLQAFEQLLNHTAATA  480
 481 YQMPAYSRTLFDPRGFC
Interface Residues: 384, 385, 386, 388, 389, 392, 393, 432
3D-footprint Homologues: 1an4_A, 5i50_B, 7rcu_E, 1am9_A, 6g1l_A, 7d8t_A, 5eyo_A, 7f2f_B
Binding Motifs: M0236_1.02 atcaCGTrmkaygt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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