Transcription Factor

						

			
Accessions: 2ayb_A (3D-footprint 20231221), 2ayb_B (3D-footprint 20231221), 2ayg_A (3D-footprint 20231221), 2ayg_B (3D-footprint 20231221)

			
Names: Regulatory protein E2, VE2_HPV6A
Organisms: Human papillomavirus type 6a
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q84294
Length: 87
Pfam Domains:      5-83 E2 (early) protein, C terminal
Sequence: 
(in bold interface residues)		   1 SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEE   60
  61 QRQQFLNVVKIPPTIRHKLGFMSMHLL
Interface Residues: 14, 17, 18, 20, 21, 22, 44, 46, 50, 56
3D-footprint Homologues: 1jj4_B, 2ayg_A, 2bop_A, 7rcf_A
Binding Motifs: 2ayb_AB CAACCGnnnnCGGTTG
2ayb_B CGGTTG
2ayg_A CGGTTG
2ayg_AB CAACCGnnnnCGGTTG
Binding Sites: 2ayb_C / 2ayb_D
2ayg_C / 2ayg_D
			
Publications: Hooley E, Fairweather V, Clarke A.R, Gaston K, Brady R.L. The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic acids research 34:3897-908 (2006). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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