Transcription Factor

Accessions: UP00524A (UniPROBE 20160601)
Names: K.lac Fox3, KLLA0F08206p
Organisms: Kluyveromyces lactis
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 113
Pfam Domains: 16-106 Fork head domain
Sequence:
(in bold interface residues)
1 KKVYTLQEIPPEYRTKPTCSYSNLITSCLRKFSTEKGMSLSEIYSGIRELFPYYKYCPDG 60
61 WQSSVRHNLSLNKSFCKVSKEGKGWLWGLDEEYIAERERQKKKQAEAQAAKAK
Interface Residues: 60, 62, 63, 64, 66, 67, 68, 70, 71, 80, 83
3D-footprint Homologues: 7vox_H, 2hdc_A, 7tdx_A, 3l2c_A, 7yzb_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 3qrf_G
Binding Motifs: UP00524A_1 tsctdrarysACGCAAwhrvcyy
UP00524A_2 ydydgkggCGCGCGTcrtmhtms
Binding Sites: TGACGCAA
AGACGCAA
ATGACGCA
ATTGCGTC
CGACGCAA
GACGCAAA
GACGCAAC
GACGCACA
GCGACGCA
GGACGCAA
GTGCGTCA
ACCACGCA
ACTGCGTC
CACGCAAA
CCACGCAA
CCACGCAC
CCGACGCA
CGACGCAC
GACGCAGA
GGGACGCA
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.