Transcription Factor

Accessions: UP00443A (UniPROBE 20160601)
Names: None, PF10_0075_D1, putative, transcription factor with AP2 domain(s)
Organisms: Plasmodium falciparum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Description: transcription factor with AP2 domain(s), putative: putative Plasmodium falciparum transcription factor, AP2 domain
Length: 104
Pfam Domains: 41-93 AP2 domain
Sequence:
(in bold interface residues)
1 NNNSTLINRNHLIKSERIKKGDVGTTTWTKSTTEGHPEYLPRIPGVRFNPKKQQWLAAWN 60
61 DNTREIRRYFSVKQYGFEQARILAVKARQEAEKAGARCKPMFHV
Interface Residues: 52, 55, 57, 58, 59
3D-footprint Homologues: 3odh_F
Binding Motifs: UP00443A_1 kwyhyaGgGTCGACmCtwtgymm
Binding Sites: GGTCGTTA
AACGACCC
AACGGGGC
AACGGTGC
AGGTCGAC
ATCGGGGC
ATCGGTGC
ATGTCGAC
CCGGGTCG
CGTCGACC
GCACCGAC
GGGTCGAC
GGTCGACA
GGTCGACC
GTCGACAC
GTCGACCA
GTCGCGAC
TCGACCCA
TCGGGGCA
TCGGTGCA
Publications: Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed]
Related annotations: PaperBLAST

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