Transcription Factor

						

			
Accessions: T060970_1.02 (CISBP 1.02)

			
Names: NCU06907, T060970_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 931
Pfam Domains:   548-570 Zinc-finger double domain
  560-582 Zinc finger, C2H2 type
  574-597 Zinc-finger double domain
Sequence: 
(in bold interface residues)		   1 MMSNPPLSGVTRPRQRLHRRQNSTPSAFEAVKIAPLPTFPQQQHQRPHMGHRRGVSLDTR   60
  61 RHPLMSSTITTTSHQDYSTLVSTTGPDTGIPTSLPAAPQDILAQQQHQAHLIARPSSSQT  120
 121 DYSDLSSDSGDSFLLSPHGTPHQRNHFMDGLASQGPIPELSLSYDTYIDPNFDAMMKRNQ  180
 181 VSYDSNNNNVMASSSSATPNFDFFASDAALSTPNFMSFPDQSPAGTGQGGWISEGEASNI  240
 241 QLRRASRRVSVGLNNSLIDKLAKYEPMANGQRPETPPMHNAAGKHAGSDVLGGNTEDEAG  300
 301 FYPPTPMETPHDRFMKQQATQQQQHQQQQQQQQTLRPSRFADDYDESMEETLKPIRGHRS  360
 361 NRNSGIFQELRQQAEAMAAAAPATSQADSMPTTFQSHTLPAAQDEDLLRIHSDFIKLEHG  420
 421 FTFPDMGSQMGPQIGSQMQGLGGMSPFDNKPDLGPPSEYGDADPQAASRQSSVSPSRRGS  480
 481 PHRRTDSIASIASAASIASINIEETKTETGVTLDDIAQYIEGPDPADGKWVCTYEDCRKR  540
 541 FGRKENIKSHVQTHLNDRQYQCPTCKKCFVRQHDLKRHAKIHTGIKPYPCECGNSFARHD  600
 601 ALTRHRQRGMCVGAFDGIVRKVVKRGRPRKNRPDMEERKDKSDRTRDRSRSHHSTSSSVS  660
 661 SFSGYSDSSVPNSPGNDYDHIIDDEQFPGLLDMPMGNVPNLPPSIVSGHAGHGHGAMPSS  720
 721 STMNPAAATMSVSSVSSAPMPSFDPRVNEVMNVDSPASRNYAHSPSAVSNYSHASHPSIS  780
 781 ITEHHGPGSDFGLPGSQNAASPAKSAVSHYTPPELSSSSSPPTHTQQQQGSQGPTYYDLD  840
 841 PSHGGMSNIPGPATSMGMGAAVGPTHVDPTNMLLHGYEHQMDQNLMLGNLDGMTKFEVME  900
 901 GYDAATEVNMFGDAHEGDGSGHDGSNMYFGS
Interface Residues: 507, 508, 511, 515, 517, 518, 521, 542, 543, 544, 545, 546, 548, 549, 550, 570, 571, 572, 573, 574, 575, 576, 577, 578, 597, 598, 599, 600, 601, 602, 603, 604, 608
3D-footprint Homologues: 8ssq_A, 5yel_A, 8ssu_A, 6ml4_A, 1tf3_A, 7n5w_A, 6jnm_A, 2drp_D, 7w1m_H, 6blw_A, 6u9q_A, 4x9j_A, 2gli_A, 5ei9_F, 2jpa_A, 1g2f_F, 5kl3_A, 2kmk_A, 7ysf_A, 5v3j_F, 4m9v_C, 8h9h_G, 2lt7_A, 6e94_A, 5kkq_D, 6a57_A, 1ubd_C, 8cuc_F, 7y3l_A, 3uk3_C, 5k5l_F, 1f2i_J, 2wbs_A, 1tf6_A, 8gn3_A, 5yj3_D, 7txc_E, 5k5i_A, 1llm_D, 7y3m_I
Binding Motifs: M0483_1.02 rgGkGGCkgg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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