Transcription Factor
| Accessions: | UP00100A (UniPROBE 20160601) |
| Names: | AA410133, GATA binding protein 6, GATA-6, GATA-binding factor 6, Gata6, Transcription factor GATA-6 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q61169 |
| Description: | GATA binding protein 6 |
| Length: | 135 |
| Pfam Domains: | 22-55 GATA zinc finger 76-109 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 PLPVPRGPSTDLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLI 60 61 KPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGI 120 121 QTRKRKPKNINKSKA |
| Interface Residues: | 31, 32, 34, 44, 48, 85, 86, 88, 98, 102, 103, 106, 123, 125, 126 |
| 3D-footprint Homologues: | 4hc9_A, 3vd6_C, 3dfx_B, 1gat_A, 4gat_A |
| Binding Motifs: | UP00100A_1 wawmkwGATAAGarttr UP00100A_2 gsgrCGATATCGsmgyd |
| Binding Sites: | AGATAACA AAGATAAG ACTGATAA AGATAACG AGATAAGA AGATAAGC CAGATAAG CCTTATCA CGAGATAA CGATAAGA CTCTTATC CTGATAAC CTGATAAG CTTATCAA CTTATCTA CTTATCTC GATAAGAA GCTTATCA TCTTATCA TCAGATAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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