Transcription Factor
| Accessions: | T100179_1.02 (CISBP 1.02) |
| Names: | SPAC32A11.03c, T100179_1.02; |
| Organisms: | Schizosaccharomyces pombe |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 942 |
| Pfam Domains: | 167-222 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MRSYSNPENGGQINDNINYSEKRPTMLPENLSLSNYDMDSFLGQFPSDNNMQLPHSTYEQ 60 61 HLQGEQQNPTNPNYFPPEFDENKVDWKQEKPKPDAPSFADNNSFDNVNSSKLTNPSPVQP 120 121 NIVKSESEPANSKQNEVVEATSVEKAKENVAHESGTPESGGSTSAPKSKKQRLTADQLAY 180 181 LLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQR 240 241 ELDSLNQKVSQAFAHEVLSTSPTSPYVGGIAANRQYANTLLPKPTRKTGNFYMKSGPMQS 300 301 SMEPCIAESDIPIRQSLSSTYYNSLSPNAVPVSSQRKYSASSYSAIPNAMSVSNQAFDVE 360 361 SPPSSYATPLTGIRMPQPESDLYSYPREVSPSSGGYRMFGHSKPSSYKASGPVRPPNMAT 420 421 GHMRTSSEPTSYDSEFYYFSCTLLVIGLWKRLRASPQDLMCFYSPPKKLFAYLIQFQGIQ 480 481 YRIEYSFFVIESIHVFRVEEPLLNELSATASSRDKPAPNEYWLQMDIQLSVPPVFHMITS 540 541 EGQGNCTDFTEGNQASEVLLHSLMGRATSMFQMLDRVRRASPELGSVIRLQKGLNPHQFL 600 601 DPQWANQLPRQPDSSVFDHQGRNPPIQGLSHDTSSEYGNKSQFKRLRSTSTPARQDLAQH 660 661 LLPPKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYEPSVSSAYPHHNLALNLDNT 720 721 QFGELGTSNISYPLSAPSDVGSLPRASNSPSRPVMHPNTQGINTEIKDMAAQFPNSQTGG 780 781 LTPNSWSMNTNVSVPFTTQNREFGGIGSSSISTTMNAPSQQLSQVPFGDVSLATENSVPS 840 841 YGFEVPSEESVYAQARTNSSVSAGVAPRLFIQTPSIPLASSAGQDSNLIEKSSSGGVYAS 900 901 QPGASGYLSHDQSGSPFEDVYSPSAGIDFQKLRGQQFSPDMQ |
| Interface Residues: | 146, 167, 168, 169, 170, 171, 172, 173, 208, 209, 211, 212, 215, 216, 219, 220, 222, 223 |
| 3D-footprint Homologues: | 5zfz_A, 6a8r_A, 3cmy_A, 2h1k_B, 3d1n_M, 1fjl_B, 1zq3_P, 2lkx_A, 2ld5_A, 1puf_A, 3l1p_A, 2hos_A, 1b72_A, 3a01_E, 5jlw_D, 3lnq_A, 1jgg_B, 5zjt_E, 4cyc_A, 7psx_B, 1nk2_P, 1puf_B, 1au7_A, 1ig7_A, 7q3o_C, 1e3o_C, 1le8_A, 5hod_A, 4qtr_D, 1o4x_A, 1du0_A, 6es3_K, 4xrs_G, 8g87_X, 3rkq_B, 5flv_I, 2hdd_A, 2r5y_A, 6m3d_C |
| Binding Motifs: | M1120_1.02 wwTTAATTAca |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.