Transcription Factor
| Accessions: | UP00393A (UniPROBE 20160601), UP00478B (UniPROBE 20160601) |
| Names: | NONE, PFF0200c, PFF0200c_DLD |
| Organisms: | Plasmodium falciparum |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | putative Plasmodium falciparum transcription factor, tandem double AP2 domain |
| Length: | 136 |
| Pfam Domains: | 88-130 AP2 domain |
| Sequence: (in bold interface residues) | 1 IGSQEPVILIDKIERCLVVEWYENNIRREQRISYKKYGNDKAKLRAKELIEKLKSGITFE 60 61 QLYPDKGPPIVRVFENVGVYNVSLIRDRIEREWRVEWLENGVPMKARWSCKKVGNDEAQK 120 121 RADTFAQSMIKGIFNP |
| Interface Residues: | 119, 122, 123 |
| 3D-footprint Homologues: | 7lw8_A |
| Binding Motifs: | UP00393A_1 gArGGGTGCACCyh UP00478B_1 cwtrasAwrGGTGCACyswwstt |
| Binding Sites: | AGGGTGCA AGGTGCAC AGTGCACC AGTGCACT ATGCACCC ATGGTGCA CGGTGCAC CGTGCACC GAGGTGCA GAGTGCAC GCGCACCC GGGGTGCA GGGTGCAA GGGTGCAC GGTGCACA GGTGCACC GTGCACAA GTGCACCA GTGGTGCA TGCACCCA CAGTGCAC CGCACCCC GATGCACC GGTGCATA GTGCACTA |
| Publications: | De Silva EK, Gehrke AR, Olszewki K, Leon I, Chahal JS, Bulyk ML, Llinas M. Specific DNA-binding by Apicomplexan AP2 transcription factors. Proc. Natl. Acad. Sci. USA. June 17, 2008; vol. 105, no. 24, 8393-8398 [Pubmed] Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.