Transcription Factor

						

			
Accessions: ZBED1_DBD (HumanTF 1.0), ZBED1 (HT-SELEX2 May2017)

			
Names: dREF homolog, Putative Ac-like transposable element, ZBED1, ZBED1_HUMAN, Zinc finger BED domain-containing protein 1, ENSG00000214717
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, HT-SELEX2 May2017 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Uniprot: O96006
Notes: Ensembl ID: ENSG00000214717; DNA-binding domain sequence; TF family: znfBED; Clone source: Megaman, TF family: Znf_BED experiment: HT-SELEX Hamming distance: 1 cycle: 3, TF family: Znf_BED experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 3
Length: 88
Pfam Domains:     19-68 BED zinc finger
Sequence: SLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLS
YHLEKNHPEEFCEFVKSNTEQMREAFAT
Binding Motifs: ZBED1_DBD cTrTCGCGACATr
ZBED1_2 mTrTCGCGAyAT
ZBED1_methyl_1 mTrTCGCGAyAk
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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