Transcription Factor
| Accessions: | T027133_1.02 (CISBP 1.02), P46505 (JASPAR 2024) |
| Names: | F23F12.9, T027133_1.02;, BZIP8_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP |
| Length: | 176 |
| Pfam Domains: | 65-117 Basic region leucine zipper |
| Sequence: (in bold interface residues) | 1 MSNTMQGAHYPQMAFDPTWQMHPAYATATAFNPYNVSFDFTRSPNTSGGSDESMSDGSKI 60 61 DPKRSPKYLEKRMKNNEAAKKSRASRKHREQKNQTENELLKRKNAALEEELKQAKCELAQ 120 121 MQITIRDMSIEREAYRRENEMLKMVNNKFADSKFEPPQPLRDMTNCNLPYKYELLS |
| Interface Residues: | 75, 76, 78, 79, 82, 83 |
| 3D-footprint Homologues: | 1dh3_C, 2dgc_A |
| Binding Motifs: | M0324_1.02 rTTrCGyAAy MA1704.1 tkATGACGTCA MA1704.2 ATGACGTCA |
| Binding Sites: | MA1704.2.10 / MA1704.2.13 / MA1704.2.14 / MA1704.2.19 / MA1704.2.20 / MA1704.2.3 / MA1704.2.6 MA1704.1.1 MA1704.1.10 MA1704.1.11 MA1704.1.12 MA1704.1.13 MA1704.1.14 MA1704.1.15 MA1704.1.16 MA1704.1.17 MA1704.1.18 MA1704.1.19 MA1704.1.2 MA1704.1.20 MA1704.1.3 MA1704.1.4 MA1704.1.5 MA1704.1.6 MA1704.1.7 MA1704.1.8 MA1704.1.9 MA1704.2.12 / MA1704.2.17 MA1704.2.18 MA1704.2.1 / MA1704.2.15 / MA1704.2.16 / MA1704.2.2 / MA1704.2.4 / MA1704.2.5 / MA1704.2.7 / MA1704.2.9 MA1704.2.8 MA1704.2.11 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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