Transcription Factor

Accessions: E3VNM4 (JASPAR 2024), T27069 (AthalianaCistrome v4_May2016)
Names: AtbZIP65, bZIP transcription factor 65, Protein TGACG (TGA, TGA10_ARATH, Transcription factor TGA10, AT5G06839, T27069;, TGA10
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 460
Pfam Domains: 158-204 Basic region leucine zipper
161-189 bZIP transcription factor
252-330 Seed dormancy control
Sequence:
(in bold interface residues)
1 MQGHHQNHHQHLSSSSATSSHGNFMNKDGYDIGEIDPSLFLYLDGQGHHDPPSTAPSPLH 60
61 HHHTTQNLAMRPPTSTLNIFPSQPMHIEPPPSSTHNTDNTRLVPAAQPSGSTRPASDPSM 120
121 DLTNHSQFHQPPQGSKSIKKEGNRKGLASSDHDIPKSSDPKTLRRLAQNREAARKSRLRK 180
181 KAYVQQLESCRIKLTQLEQEIQRARSQGVFFGGSLIGGDQQQGGLPIGPGNISSEAAVFD 240
241 MEYARWLEEQQRLLNELRVATQEHLSENELRMFVDTCLAHYDHLINLKAMVAKTDVFHLI 300
301 SGAWKTPAERCFLWMGGFRPSEIIKVIVNQIEPLTEQQIVGICGLQQSTQEAEEALSQGL 360
361 EALNQSLSDSIVSDSLPPASAPLPPHLSNFMSHMSLALNKLSALEGFVLQADNLRHQTIH 420
421 RLNQLLTTRQEARCLLAVAEYFHRLQALSSLWLARPRQDG
Interface Residues: 169, 170, 172, 173, 176, 177
3D-footprint Homologues: 1dh3_C, 2dgc_A
Binding Motifs: M0225 / MA1346.1 ratGmTGACGTCAyy
M0202 drTGACGTCAkCaw
MA1346.2 GmTGACGTCA
Binding Sites: MA1346.1.2
MA1346.1.5
MA1346.1.4
MA1346.1.3
MA1346.1.14
MA1346.1.1
MA1346.1.19
MA1346.1.7
MA1346.1.6
MA1346.1.15
MA1346.1.12
MA1346.1.9
MA1346.1.10
MA1346.1.8
MA1346.1.11
MA1346.1.13
MA1346.1.16
MA1346.1.17 / MA1346.1.20
MA1346.1.18
MA1346.2.1
MA1346.2.10
MA1346.2.11
MA1346.2.12
MA1346.2.13
MA1346.2.14
MA1346.2.15
MA1346.2.16
MA1346.2.17 / MA1346.2.20
MA1346.2.18
MA1346.2.19
MA1346.2.2
MA1346.2.3
MA1346.2.4
MA1346.2.5
MA1346.2.6
MA1346.2.7
MA1346.2.8
MA1346.2.9
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.