Transcription Factor
| Accessions: | E3VNM4 (JASPAR 2024), T27069 (AthalianaCistrome v4_May2016) |
| Names: | AtbZIP65, bZIP transcription factor 65, Protein TGACG (TGA, TGA10_ARATH, Transcription factor TGA10, AT5G06839, T27069;, TGA10 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 460 |
| Pfam Domains: | 158-204 Basic region leucine zipper 161-189 bZIP transcription factor 252-330 Seed dormancy control |
| Sequence: (in bold interface residues) | 1 MQGHHQNHHQHLSSSSATSSHGNFMNKDGYDIGEIDPSLFLYLDGQGHHDPPSTAPSPLH 60 61 HHHTTQNLAMRPPTSTLNIFPSQPMHIEPPPSSTHNTDNTRLVPAAQPSGSTRPASDPSM 120 121 DLTNHSQFHQPPQGSKSIKKEGNRKGLASSDHDIPKSSDPKTLRRLAQNREAARKSRLRK 180 181 KAYVQQLESCRIKLTQLEQEIQRARSQGVFFGGSLIGGDQQQGGLPIGPGNISSEAAVFD 240 241 MEYARWLEEQQRLLNELRVATQEHLSENELRMFVDTCLAHYDHLINLKAMVAKTDVFHLI 300 301 SGAWKTPAERCFLWMGGFRPSEIIKVIVNQIEPLTEQQIVGICGLQQSTQEAEEALSQGL 360 361 EALNQSLSDSIVSDSLPPASAPLPPHLSNFMSHMSLALNKLSALEGFVLQADNLRHQTIH 420 421 RLNQLLTTRQEARCLLAVAEYFHRLQALSSLWLARPRQDG |
| Interface Residues: | 169, 170, 172, 173, 176, 177 |
| 3D-footprint Homologues: | 1dh3_C, 2dgc_A |
| Binding Motifs: | M0225 / MA1346.1 ratGmTGACGTCAyy M0202 drTGACGTCAkCaw MA1346.2 GmTGACGTCA |
| Binding Sites: | MA1346.1.2 MA1346.1.5 MA1346.1.4 MA1346.1.3 MA1346.1.14 MA1346.1.1 MA1346.1.19 MA1346.1.7 MA1346.1.6 MA1346.1.15 MA1346.1.12 MA1346.1.9 MA1346.1.10 MA1346.1.8 MA1346.1.11 MA1346.1.13 MA1346.1.16 MA1346.1.17 / MA1346.1.20 MA1346.1.18 MA1346.2.1 MA1346.2.10 MA1346.2.11 MA1346.2.12 MA1346.2.13 MA1346.2.14 MA1346.2.15 MA1346.2.16 MA1346.2.17 / MA1346.2.20 MA1346.2.18 MA1346.2.19 MA1346.2.2 MA1346.2.3 MA1346.2.4 MA1346.2.5 MA1346.2.6 MA1346.2.7 MA1346.2.8 MA1346.2.9 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.