Transcription Factor
| Accessions: | T075496_1.02 (CISBP 1.02), P68350 (JASPAR 2024), T05063 (AthalianaCistrome v4_May2016) |
| Names: | AT1G29160, T075496_1.02;, AtDOF1.5, Dof zinc finger protein DOF1.5, DOF15_ARATH, COG1, T05063; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 175 |
| Pfam Domains: | 58-116 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MATQDSQGIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDK 60 61 IIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRV 120 121 GGFAELLGAATGAVDQVELDALLVEEWRAATASHGGFRHDFPVKRLRCYTDGQSC |
| Interface Residues: | 83, 84 |
| 3D-footprint Homologues: | 1k3x_A |
| Binding Motifs: | M0646_1.02 rwWAAmGT M0265 / MA1279.1 aaaaaaaarAAAAAGtraaaa M0276 httwTkyACTTTTTb MA1279.2 aaaarAAAAAGtraaa |
| Binding Sites: | MA1279.1.4 MA1279.1.8 MA1279.1.14 MA1279.1.1 MA1279.1.10 MA1279.1.11 MA1279.1.12 MA1279.1.13 MA1279.1.15 MA1279.1.16 MA1279.1.17 MA1279.1.18 MA1279.1.19 MA1279.1.2 MA1279.1.20 MA1279.1.3 MA1279.1.5 MA1279.1.6 MA1279.1.7 MA1279.1.9 MA1279.2.1 MA1279.2.10 MA1279.2.11 MA1279.2.12 MA1279.2.13 MA1279.2.14 MA1279.2.15 MA1279.2.16 MA1279.2.17 MA1279.2.18 MA1279.2.19 MA1279.2.2 MA1279.2.20 MA1279.2.3 MA1279.2.4 MA1279.2.5 MA1279.2.6 MA1279.2.7 MA1279.2.8 MA1279.2.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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