Transcription Factor

						

			
Accessions: T131456_1.02 (CISBP 1.02)

			
Names: Cbr-sex-1, T131456_1.02;
Organisms: Caenorhabditis briggsae
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Nuclear receptor
Length: 549
Pfam Domains:   158-226 Zinc finger, C4 type (two domains)
Sequence: 
(in bold interface residues)		   1 MSYECMEYPTMGGTDTPLSICTSTPAYYSPTNKGMPQSDQQPHTSNAQWTTTHSQNNMPY   60
  61 IKEEFPSEYRISTGSSARAQTANYVDSGAPNGRFFNNVNGYNAQHHHQQQQFFESRASVS  120
 121 SPATSASLSNSSLSPESISSGPVVVNPRHHHITKVTTYCRICGDKASGYHYGVTSCEGCK  180
 181 GFFRRSIQRKIDYRCLKQQFCEIRRDSRNRCQYCRFKKCLDAGMSKDSIQISTQFFFPAV  240
 241 RQTKRNKPPTSDRTVSSTVNVEPDDHIICADRIIDLHLKTCNYTSQKVATMMRKPFNLAL  300
 301 GPDHDTNRLNAWKVFGHNIEMEVQNAIYFVRDIPRTEFVSGDDKAALLKKNIFGIYLCRI  360
 361 FRSLSEEGMVMHDGRVTNVPTLRLLFGCLADEMIQFAVYCRNIGVSDADMAILAALVLVQ  420
 421 PAGLDYRQDVQNKGPPGLAQLIQFFQNMMHKKLCSHPNGYDIVFNFHKLVPALNGINNML  480
 481 DEAFVKFLRDHKESLSLPALFLEVFRLNERPQQSPVYYNQENQYVVPQDCRMASGDQQEQ  540
 541 LMVVPKPEI
Interface Residues: 167, 168, 170, 171, 177, 178, 180, 181, 184, 185, 209, 244, 246
3D-footprint Homologues: 6fbq_A, 6l6q_B, 7wnh_D, 1lo1_A, 3g9m_B, 1a6y_A, 4oln_B, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 8rm6_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B
Binding Motifs: M1430_1.02 dTGACCTy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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