Transcription Factor
| Accessions: | T061515_1.02 (CISBP 1.02) |
| Names: | sptf-3, T061515_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 412 |
| Pfam Domains: | 316-338 Zinc finger, C2H2 type 316-338 C2H2-type zinc finger 330-357 Zinc-finger double domain 344-368 Zinc finger, C2H2 type 344-368 C2H2-type zinc finger 361-383 Zinc-finger double domain 374-396 C2H2-type zinc finger 374-396 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MSKSGQQQQPHQQMQQQQQQQGKMMVVHHQRTTTPDGSQVYLLQPSQSHPQQRQVQFIPI 60 61 QVAQGEKKPQTVMMNQMMGQQQQQQPSSSNQQSQQQVQQQQQQVHQVQQVQQHQMQQQNQ 120 121 TVQQQHLMMETIDQVGSGIIGNSNGNNQQQQQQQQQQQQRRDPIPIAPAGMVSGQRMQQQ 180 181 QQQPQQQQQHNNNNTGASTSNGGVNAAPVMPVMGGQQRITLGNLHFQQDPNDPQKWIITN 240 241 EGPPVAGPSAPARKPNQIQHRQMIPQMNEDGMMNMGNDYGDINGQGLGEAPKRCACTCPN 300 301 CLQQNNRQGDGKSRIHICHLCNKTYGKTSHLRAHLRGHAGNKPFACDWQHCNKKFTRSDE 360 361 LQRHRRTHTGEKRFACNHCGKKFMRSDHLTKHERTHQSNRINNINQQTLRLS |
| Interface Residues: | 303, 304, 305, 308, 309, 326, 327, 328, 329, 330, 332, 333, 335, 336, 339, 356, 357, 358, 359, 360, 361, 362, 363, 364, 367, 384, 385, 386, 387, 388, 389, 390, 391, 392, 400, 407, 410 |
| 3D-footprint Homologues: | 7w1m_H, 5kkq_D, 8ssq_A, 8ssu_A, 7ysf_A, 1tf3_A, 7n5w_A, 6jnm_A, 6ml4_A, 3uk3_C, 4x9j_A, 2gli_A, 5kl3_A, 1tf6_A, 5ei9_F, 1g2f_F, 5v3j_F, 1ubd_C, 6blw_A, 5k5i_A, 2kmk_A, 6u9q_A, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 6a57_A, 5yel_A, 2jpa_A, 8cuc_F, 7y3l_A, 8gn3_A, 1f2i_J, 2wbs_A, 7txc_E, 1llm_D, 2drp_D, 4m9v_C, 5yj3_D |
| Binding Motifs: | M0495_1.02 rgGGGCGkrt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.