Transcription Factor
| Accessions: | Q75UK1 (JASPAR 2024) |
| Names: | Q75UK1_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q75UK1 |
| Length: | 477 |
| Pfam Domains: | 86-284 T-box |
| Sequence: (in bold interface residues) | 1 MNGFSCSQPPNYPPIPTNHQPHFLPFNQPINHPGINHNTAPPQDLENFYIHNQPNQHHTS 60 61 HNNHYIQDNETKWPPNIAHKSDQISIDLVNKELWRKFHEIGTEMIITKAGRRMFPSIKLN 120 121 FKGLDPTSMYILAIDILPVDNNRYRYVYHSSQWMAAGTTEASTPPRTYVHPDSPASGDVW 180 181 MKQPITFDKLKLTNNEQNNKGHLILHSMHKYQPRIHLISCGKFPKYDVISYVPAVGRIDD 240 241 VIRDDVMTFVFPECAFTTVTAYQNQQITQLKIDRNPFAKGFRDSNKSWKPRSSNNNERQT 300 301 ATKRQWRVKTTSQSPVMTSNTTDHIVSPIHPMINMSSHPPIKRNKLHLEQAFNEPDFVFP 360 361 SISPDYCVTNLDNDVTCSELPYQRNPDDVIKPSDSGYDACLTSQSFLRPFDVNAFNPLQG 420 421 DLPQTENAASFIDDFELELSTNGTNSDVKHNESEYYVISTSHSENDVTANLTSNNLE |
| Interface Residues: | 75, 76, 79, 80, 111, 260, 261, 277, 280, 281 |
| 3D-footprint Homologues: | 5flv_I, 1xbr_B, 6f59_B, 2x6v_A, 4a04_B, 1h6f_B |
| Binding Motifs: | MA1921.1 kkrkgrrAGGTGTgAtvwCaCc MA1921.2 AGGTGTgAtvwCaC |
| Publications: | Kugler JE, Gazdoiu S, Oda-Ishii I, Passamaneck YJ, Erives AJ, Di Gregorio A. Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J Cell Sci : (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.