Transcription Factor
| Accessions: | 1nk3_P (3D-footprint 20231221) |
| Names: | Homeobox protein NK-2, HOMEOBOX PROTEIN VND, Protein ventral nervous system defective, VND_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | P22808 |
| Length: | 63 |
| Pfam Domains: | 3-59 Homeobox domain |
| Sequence: (in bold interface residues) | 1 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 60 61 QNE |
| Interface Residues: | 3, 4, 5, 6, 44, 45, 47, 48, 51, 52, 55, 56, 59 |
| 3D-footprint Homologues: | 1fjl_B, 6a8r_A, 3cmy_A, 1puf_A, 1ig7_A, 3d1n_M, 5zfz_A, 1nk2_P, 2lkx_A, 1zq3_P, 2ld5_A, 7q3o_C, 6es3_K, 5flv_I, 5zjt_E, 3a01_E, 2h1k_B, 7psx_B, 1au7_A, 3lnq_A, 2hdd_A, 1b72_A, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 1jgg_B, 6m3d_C, 5jlw_D, 1e3o_C, 4j19_B, 1le8_A, 7xrc_C, 2xsd_C, 3l1p_A, 8g87_X, 1k61_B, 5hod_A, 1o4x_A, 4qtr_D, 1mnm_C, 1du0_A, 4cyc_A |
| Binding Motifs: | 1nk3_P CAnTTGaC |
| Binding Sites: | 1nk3_A 1nk3_B |
| Publications: | Gruschus J.M, Tsao D.H, Wang L.H, Nirenberg M, Ferretti J.A. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity. Biochemistry 36:5372-80 (1997). [Pubmed] |
| Related annotations: | PaperBLAST |
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