Transcription Factor
| Accessions: | ATHB5 (Athamap 20091028), P46667 (JASPAR 2024), T26262 (AthalianaCistrome v4_May2016) |
| Names: | ATHB5, ATHB5_ARATH, HD-ZIP protein ATHB-5, Homeobox-leucine zipper protein ATHB-5, Homeodomain transcription factor ATHB-5, AT5G65310, T26262; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HB |
| Length: | 312 |
| Pfam Domains: | 74-125 Homeobox domain 127-169 Homeobox associated leucine zipper |
| Sequence: (in bold interface residues) | 1 MKRSRGSSDSLSGFLPIRHSTTDKQISPRPTTTGFLYSGAGDYSQMFDALEDDGSLEDLG 60 61 GVGHASSTAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNR 120 121 RARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENG 180 181 ALKAVEANQSVMANNEVLELSHRSPSPPPHIPTDAPTSELAFEMFSIFPRTENFRDDPAD 240 241 SSDSSAVLNEEYSPNTVEAAGAVAATTVEMSTMGCFSQFVKMEEHEDLFSGEEACKLFAD 300 301 NEQWYCSDQWNS |
| Interface Residues: | 69, 72, 73, 74, 75, 77, 111, 112, 114, 115, 118, 119, 122, 123, 125, 126 |
| 3D-footprint Homologues: | 1puf_A, 5zfz_A, 1puf_B, 3l1p_A, 1au7_A, 1nk2_P, 5jlw_D, 2ld5_A, 1ig7_A, 7q3o_C, 7xrc_C, 1e3o_C, 1le8_A, 1b72_A, 6a8r_A, 4xrm_B, 3a01_E, 1zq3_P, 3rkq_B, 1o4x_A, 1du0_A, 6es3_K, 4xrs_G, 3cmy_A, 2h1k_B, 1jgg_B, 4cyc_A, 2lkx_A, 5flv_I, 2hdd_A, 8g87_X, 5zjt_E, 4qtr_D, 2r5y_A, 1fjl_B, 7psx_B, 5hod_A, 3lnq_A, 2hos_A, 6m3d_C |
| Binding Motifs: | ATHB5 bsysCAATtATTG MA0110.1 cCAATkATT MA0110.2 bsysCAATtATTG M0410 yyAATmATTra M0412 cAATkATTrr MA0110.3 wwCAATCATTww MA0110.4 CAATCATT |
| Binding Sites: | MA0110.4.2 MA0110.1.1 MA0110.1.10 MA0110.1.11 MA0110.1.12 MA0110.1.13 / MA0110.1.14 MA0110.1.15 MA0110.1.16 MA0110.1.17 MA0110.1.18 MA0110.1.19 MA0110.1.2 MA0110.1.20 MA0110.1.3 / MA0110.1.5 MA0110.1.4 MA0110.1.6 MA0110.1.7 MA0110.1.8 MA0110.1.9 MA0110.2.1 MA0110.2.10 MA0110.2.11 MA0110.2.12 MA0110.2.13 MA0110.2.14 MA0110.2.15 MA0110.2.16 MA0110.2.17 MA0110.2.18 MA0110.2.19 MA0110.2.2 MA0110.2.20 MA0110.2.3 MA0110.2.4 MA0110.2.5 MA0110.2.6 MA0110.2.7 MA0110.2.8 MA0110.2.9 MA0110.3.1 MA0110.3.10 MA0110.3.11 / MA0110.3.6 MA0110.3.12 / MA0110.3.7 MA0110.3.13 / MA0110.3.8 MA0110.3.14 / MA0110.3.9 MA0110.3.15 MA0110.3.10 / MA0110.3.16 MA0110.3.11 / MA0110.3.17 MA0110.3.12 / MA0110.3.18 MA0110.3.19 MA0110.3.2 MA0110.3.20 MA0110.3.1 / MA0110.3.3 MA0110.3.2 / MA0110.3.4 MA0110.3.5 MA0110.3.3 / MA0110.3.6 MA0110.3.4 / MA0110.3.7 MA0110.3.5 / MA0110.3.8 MA0110.3.9 MA0110.3.13 MA0110.3.14 MA0110.3.15 MA0110.3.16 MA0110.3.17 MA0110.3.18 MA0110.3.19 MA0110.3.20 MA0110.4.1 / MA0110.4.7 MA0110.4.10 MA0110.4.11 / MA0110.4.18 / MA0110.4.3 MA0110.4.12 / MA0110.4.16 / MA0110.4.9 MA0110.4.13 / MA0110.4.8 MA0110.4.14 MA0110.4.15 / MA0110.4.20 / MA0110.4.6 MA0110.4.17 / MA0110.4.5 MA0110.4.19 / MA0110.4.4 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
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