Transcription Factor
| Accessions: | T116847_1.02 (CISBP 1.02), Q9SQQ9 (JASPAR 2024), T16550 (AthalianaCistrome v4_May2016) |
| Names: | AT3G04030, T116847_1.02;, AtNSR1, Myb family transcription factor PHL9, Myb-related protein 2, PHL9_ARATH, Protein NITROGEN STARVATION RESPONSE 1, Protein PHR1-LIKE 9, T16550; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 394 |
| Pfam Domains: | 47-98 Myb-like DNA-binding domain 146-193 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MYYQNQHQGKNILSSSRMHITSERHPFLRGNSPGDSGLILSTDAKPRLKWTPDLHERFIE 60 61 AVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKIGIMTMM 120 121 EEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGK 180 181 YLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKELQNLCSQQM 240 241 QTNYPPDCSLESCLTSSEGTQKNSKMLENNRLGLRTYIGDSTSEQKEIMEEPLFQRMELT 300 301 WTEGLRGNPYLSTMVSEAEQRISYSERSPGRLSIGVGLHGHKSQHQQGNNEDHKLETRNR 360 361 KGMDSTTELDLNTHVENYCTTRTKQFDLNGFSWN |
| Interface Residues: | 47, 87, 88, 91, 92, 95, 96 |
| 3D-footprint Homologues: | 6j5b_C, 6qec_A, 7d3t_D |
| Binding Motifs: | M1325_1.02 wkATtCbcy M0377 / MA1168.1 aadrGAATmTTytt M0390 rrAAkATTCyytttt MA1168.2 rGAATmTT |
| Binding Sites: | MA1168.1.3 MA1168.1.5 MA1168.1.2 MA1168.1.4 MA1168.1.1 MA1168.1.10 MA1168.1.11 MA1168.1.12 MA1168.1.13 MA1168.1.14 MA1168.1.15 MA1168.1.16 MA1168.1.17 MA1168.1.18 MA1168.1.19 MA1168.1.20 MA1168.1.6 MA1168.1.7 MA1168.1.8 MA1168.1.9 MA1168.2.1 MA1168.2.10 MA1168.2.11 MA1168.2.12 MA1168.2.13 MA1168.2.14 MA1168.2.15 MA1168.2.16 MA1168.2.17 MA1168.2.18 MA1168.2.19 MA1168.2.2 MA1168.2.20 MA1168.2.3 MA1168.2.4 MA1168.2.5 MA1168.2.6 MA1168.2.7 MA1168.2.8 MA1168.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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