Transcription Factor

						

			
Accessions: Q4H338 (JASPAR 2024)

			
Names: Q4H338_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H338
Length: 597
Pfam Domains:   271-327 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MDSSKSEDQTTMGQISKNMQVPSHVNSKDKQWQSKIFSPAREISLQNEQKTSQSKFHPYV   60
  61 RPQTSNSENFRHLIPYFPPSILSGSCPSAWGRNDQIPEDKRRLNNQIPSDHAPIPGDQNS  120
 121 RSNLDQKKLEKQKEVNETEARKVENFEFLQQQRFGAKHKMAHACNATMNGEDNMNTKPTT  180
 181 TLGLDNPIHNSNQHDEENVHVVTSKMSFPSQGVAQETNDVHDEILDVVGAAQSSLSPCVT  240
 241 SPATSHDDVTKQLLCERESSRVYSPQNEIKKRPRTAFTPEQIKRLEAEFHRNKYLSVGKR  300
 301 MELSKALKLTETQIKIWFQNRRTKWKREYLSEWEVWAHQNYYAMHGLYGAAAFGGKPSPS  360
 361 FPQQAVRNPAFVGPPNPMLPQFAKPGFVPTPMTNAGLASQHYSMLRNHLTNENALLDKAG  420
 421 EYQKQLEQHPMNFPRLFPPNPHLPGFPPPYNPVLPPITYYMPQQATNESVSPRDNSPLSS  480
 481 DRSPNPTPPPSESPPSNDTNQRNFQKSPDLHSGFQLPALHRPRVALPGTFPPTHHGFLPN  540
 541 LIAGGALLRPYSLPPSFSSSLPILGVSRPPGHMTAPSPIGQLTVPPRVPVSPTTLRR
Interface Residues: 270, 271, 272, 273, 274, 312, 313, 315, 316, 319, 320, 322, 323, 324, 327
3D-footprint Homologues: 4j19_B, 3d1n_M, 5zjt_E, 8ejp_B, 1fjl_B, 6a8r_A, 1ig7_A, 3cmy_A, 8pmf_A, 5zfz_A, 1puf_A, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 1jgg_B, 6m3d_C, 2ld5_A, 7q3o_C, 6es3_K, 5flv_I, 2hos_A, 9b8u_A, 1puf_B, 8ik5_C, 7psx_B, 1au7_A, 5hod_A, 3a01_E, 8osb_E, 1b72_A, 5jlw_D, 3rkq_B, 8eml_B, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 1e3o_C, 2xsd_C, 1le8_A, 7xrc_C, 1mnm_C, 8bx1_A, 1k61_B, 4qtr_D, 1o4x_A, 1le8_B, 1du0_A, 8g87_X
Binding Motifs: MA1905.1 wwwwtmaTTAATTrvkdwww
MA1905.2 TTAATT
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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