Transcription Factor

						

			
Accessions: T090244_1.02 (CISBP 1.02)

			
Names: ATML1, T090244_1.02;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 762
Pfam Domains:    63-118 Homeobox domain
  262-481 START domain
Sequence: 
(in bold interface residues)		   1 MYHPNMFESHHHMFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP   60
  61 NKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMKAQ  120
 121 HERHENQILKSENDKLRAENNRYKDALSNATCPNCGGPAAIGEMSFDEQHLRIENARLRE  180
 181 EIDRISAIAAKYVGKPLMANSSSFPQLSSSHHIPSRSLDLEVGNFGNNNNSHTGFVGEMF  240
 241 GSSDILRSVSIPSEADKPMIVELAVAAMEELVRMAQTGDPLWVSSDNSVEILNEEEYFRT  300
 301 FPRGIGPKPIGLRSEASRESTVVIMNHINLIEILMDVNQWSSVFCGIVSRALTLEVLSTG  360
 361 VAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGIWAVVDVSLDSLRPSPITRS  420
 421 RRRPSGCLIQELQNGYSKVTWVEHIEVDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCE  480
 481 RLASSMASNIPACDLSVITSPEGRKSMLKLAERMVMSFCTGVGASTAHAWTTLSTTGSDD  540
 541 VRVMTRKSMDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRSEWDILSNGGLVQEM  600
 601 AHIANGRDPGNSVSLLRVNSGNSGQSNMLILQESCTDASGSYVIYAPVDIIAMNVVLSGG  660
 661 DPDYVALLPSGFAILPDGSARGGGGSANASAGAGVEGGGEGNNLEVVTTTGSCGGSLLTV  720
 721 AFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAALACDGA
Interface Residues: 9, 10, 62, 63, 64, 65, 66, 67, 68, 104, 105, 107, 108, 111, 112, 114, 115, 116, 118, 119
3D-footprint Homologues: 3d1n_M, 1puf_A, 8ejp_B, 2lkx_A, 5zfz_A, 6fqp_B, 1nk2_P, 4j19_B, 2ld5_A, 8ik5_C, 8pmf_A, 1mnm_C, 5zjt_E, 1le8_B, 1puf_B, 1k61_B, 2d5v_B, 2r5y_A, 5jlw_D, 1le8_A, 8osb_E, 7q3o_C, 1ig7_A, 7xrc_C, 1e3o_C, 2xsd_C, 1au7_A, 7psx_B, 1fjl_B, 4qtr_D, 3a01_E, 6fqq_E, 1b72_A, 5hod_A, 3rkq_B, 6a8r_A, 4xrm_B, 3cmy_A, 2hdd_A, 8eml_B, 1du0_A, 4cyc_A, 1jgg_B, 6es3_K, 4xrs_G, 8g87_X, 6wig_A, 9b8u_A, 1zq3_P, 8bx1_A, 5flv_I, 3lnq_A, 2hos_A, 6m3d_C
Binding Motifs: M0852_1.02 mwtwaatrys
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.