Transcription Factor
| Accessions: | T000607_1.02 (CISBP 1.02), P82280 (JASPAR 2024) |
| Names: | T000607_1.02;, TEM2, AP2/ERF and B3 domain-containing transcription repressor RAV2, Ethylene-responsive transcription factor RAV2, Protein RELATED TO ABI3/VP1 2, Protein RELATED TO APETALA2 8, Protein TEMPRANILLO 2, RAV2_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 352 |
| Pfam Domains: | 63-111 AP2 domain 188-281 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MDSSCIDEISSSTSESFSATTAKKLSPPPAAALRLYRMGSGGSSVVLDPENGLETESRKL 60 61 PSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFKN 120 121 VLEDGDLAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKRNGSSTTQNDKV 180 181 LKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWR 240 241 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRSGPRENPV 300 301 QVVVRLFGVDIFNVTTVKPNDVVAVCGGKRSRDVDDMFALRCSKKQAIINAL |
| Interface Residues: | 69, 71, 73, 77, 79, 81, 86, 88, 193, 195, 200, 201, 202, 204, 246, 247, 248, 249, 251 |
| 3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 6j9b_A, 6j9c_D, 6ycq_A, 6fas_B, 7et6_A, 8oj2_A |
| Binding Motifs: | M0013_1.02 kATGTTGC MA1797.1 GCAACATa |
| Publications: | Kagaya Y., Ohmiya K., Hattori T. RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants. Nucleic Acids Res. 27:470-478 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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