Transcription Factor

						

			
Accessions: T04538 (AthalianaCistrome v4_May2016)

			
Names: AT1G01060, LHY1, T04538;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related
Length: 645
Pfam Domains:     24-68 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ   60
  61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSS  120
 121 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG  180
 181 DIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPS  240
 241 GMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNL  300
 301 IMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWA  360
 361 SHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASS  420
 421 SDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE  480
 481 TDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQ  540
 541 ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL  600
 601 KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST
Interface Residues: 24, 59, 62, 63, 66, 67
3D-footprint Homologues: 6j5b_C, 7d3t_D, 1mse_C
Binding Motifs: M0587 AGATATTTwt
M0592 AGATATTTwtw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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