Transcription Factor
| Accessions: | A2A5K6 (JASPAR 2024) |
| Names: | NIF-1, NRC-interacting factor 1, Zinc finger protein 335, ZN335_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | A2A5K6 |
| Length: | 1337 |
| Pfam Domains: | 248-271 Zinc finger, C2H2 type 248-271 C2H2-type zinc finger 248-271 C2H2-type zinc-finger domain 466-488 C2H2-type zinc finger 510-534 Zinc-finger double domain 563-585 C2H2-type zinc finger 563-585 Zinc finger, C2H2 type 578-601 Zinc-finger double domain 591-613 Zinc finger, C2H2 type 593-613 C2H2-type zinc finger 622-644 C2H2-type zinc finger 636-659 Zinc-finger double domain 1019-1041 C2H2-type zinc finger 1047-1069 C2H2-type zinc finger 1063-1086 Zinc-finger double domain 1075-1097 C2H2-type zinc-finger domain 1075-1097 C2H2-type zinc finger 1089-1113 Zinc-finger double domain 1103-1126 Zinc finger, C2H2 type 1103-1126 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MEENEVESSSDAAPRPGQPEEPSESGLGVCTSEAVSADSSDAATVPGLTEADDSGVGQSS 60 61 DGGNHSVEEVSESISTDPLPHGCLPDSSSVSRGPVAEMPGGPPALVHSSVLPDPSMLVSD 120 121 CTASSSDLGSAIDKIIESTIGPDLIQSCITVTSGEEGGAETTQYLILQGPDDGAPMASSM 180 181 STSTLANSLAAIEALADGPTSTSACLEPPEEPQGDPSSVAQQPPAPVTEELDLQSLEAMM 240 241 EVVVVQQFKCKMCQYRSSTKATLLRHMRERHFRPALAAAAAATGKRGRVRKWGTSTKTTE 300 301 EDRPEEEEEDDDIVDAGAIDDLEEDSDYNPAEDEPRGRQLRLQRPTPSTPRPRRRPGRPR 360 361 KLPRLETSDLHDGVGQPLVSSQSTQSPPELQDLEAPSSSGLRALGKVGRGLVESGVSQSD 420 421 AENAAPSCQDEADAPPRRRGRPSRRFLGKKYRKYYYKSPKPLLRPYLCRICGSRFLSHED 480 481 LRFHVNSHEAGDPQLFRCLQCSYRSRRWSSLKEHMFNHVGSKPYKCDECSYTSVYRKDVI 540 541 RHAAVHSQDRKKRPDPTPKLSSFPCPVCGRVYPMQKRLTQHMKTHSTEKPHMCDKCGKSF 600 601 KKRYTFKMHLLTHIQAVANRRFKCEFCEFVCEDKKALLNHQLSHVSDKPFKCSFCPYRTF 660 661 REDFLLSHVAVKHTGAKPFACEYCHFSTRHKKNLRLHVRCRHANSFEEWGRRHPEEPPSR 720 721 RRPFFSLQQIEELKQQHSTAPGPPLSSPGPEAPQEPAPFQSPETPPLLCPDALGGTTIIY 780 781 QQGAEESTAVATQTALDLLLNMSAQRELGATALQVAVVKSEGIEAELTSTGGQPSPEDTT 840 841 PRVVTLHMAESGSSVAAESQLGPSDLQQIALPSGPFGGASYSVITAPPVEGRTSASGPPY 900 901 REEPPGEAAQAVVVSDTLKEAGTHYIMAADGTQLHHIELTADGSISFPSPDTLAPGTKWP 960 961 LLQCGGPPRDGSEVLSPTKTHHMGGSQGSSTPPPAASHTLGLVVPQSPPSAAASSTKKFS 1020 1021 CKVCSEAFPSRAEMESHKRAHAGPAAFKCPDCPFSARQWPEVRAHMAQHSSLRPHQCNQC 1080 1081 SFASKNKKDLRRHMLTHTNEKPFSCHVCGQRFNRNGHLKFHIQRLHSIDGRKTGTSTARA 1140 1141 PAQTIILNSEEETLATLHTAFQSSHGVLGTERLQQALSQEHIIVAQEQTVTNQEEATYIQ 1200 1201 EITADGQTVQHLVTSDNQVQYIISQDGVQHLLPQEYVVVPDGHHIQVQEGQITHIQYEQG 1260 1261 TPFLQESQIQYVPVSPSQQLVTQAQLEAAAHSAVTAVADAAMAQAQGLFGTEEAVPEQIH 1320 1321 QLQHQGIEYDVITLSDD |
| Interface Residues: | 476, 479, 480, 507, 508, 510, 513, 516, 535, 536, 537, 538, 540, 541, 574, 575, 576, 577, 580, 581, 601, 602, 603, 604, 605, 606, 608, 609, 620, 621, 622, 632, 633, 634, 635, 636, 638, 639, 640, 642, 645, 659, 660, 661, 662, 663, 664, 665, 667, 671, 689, 690, 691, 692, 693, 694, 695, 696, 1030, 1032, 1033, 1035, 1036, 1038, 1039, 1042, 1047, 1057, 1058, 1059, 1060, 1061, 1064, 1085, 1086, 1087, 1088, 1089, 1091, 1092, 1113, 1114, 1115, 1116, 1117, 1119, 1120, 1124 |
| 3D-footprint Homologues: | 7w1m_H, 6jnm_A, 6a57_A, 5yj3_D, 8ssq_A, 8ssu_A, 2drp_D, 4x9j_A, 2lt7_A, 7txc_E, 6ml4_A, 5v3j_F, 6u9q_A, 4m9v_C, 7ysf_A, 5yel_A, 5k5l_F, 7n5w_A, 5kl3_A, 8h9h_G, 3uk3_C, 2gli_A, 5kkq_D, 5ei9_F, 6e94_A, 2jpa_A, 2kmk_A, 1tf3_A, 6blw_A, 1tf6_A, 1g2f_F, 1ubd_C, 8cuc_F, 7y3l_A, 5k5i_A, 1llm_D, 1f2i_J, 2wbs_A, 8gn3_A, 7y3m_I |
| Binding Motifs: | MA2002.1 rrtCAGGCAsy MA2002.2 tCAGGCA |
| Binding Sites: | MA2002.1.1 MA2002.1.10 / MA2002.1.11 MA2002.1.11 / MA2002.1.12 MA2002.1.12 / MA2002.1.14 MA2002.1.13 / MA2002.1.15 MA2002.1.14 / MA2002.1.16 MA2002.1.15 / MA2002.1.17 MA2002.1.16 / MA2002.1.18 MA2002.1.17 / MA2002.1.20 MA2002.1.18 MA2002.1.19 MA2002.1.2 / MA2002.1.3 MA2002.1.20 MA2002.1.3 / MA2002.1.4 MA2002.1.4 MA2002.1.5 MA2002.1.6 MA2002.1.7 MA2002.1.8 MA2002.1.10 / MA2002.1.9 MA2002.1.13 MA2002.1.19 MA2002.1.2 MA2002.1.9 MA2002.2.1 MA2002.2.10 / MA2002.2.18 / MA2002.2.7 / MA2002.2.9 MA2002.2.11 / MA2002.2.17 MA2002.2.12 / MA2002.2.15 / MA2002.2.2 / MA2002.2.3 MA2002.2.13 / MA2002.2.16 MA2002.2.14 MA2002.2.19 / MA2002.2.5 MA2002.2.20 MA2002.2.4 MA2002.2.6 MA2002.2.8 |
| Publications: | Han BY, Foo CS, Wu S, Cyster JG. The C2H2-ZF transcription factor Zfp335 recognizes two consensus motifs using separate zinc finger arrays. Genes Dev 30:1509-14 (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.