Transcription Factor
Accessions: | T16176 (AthalianaCistrome v4_May2016) |
Names: | AT3G12250, T16176;, TGA6 |
Organisms: | Arabidopsis thaliana |
Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
Length: | 355 |
Pfam Domains: | 68-113 Basic region leucine zipper 71-111 bZIP transcription factor 152-230 Seed dormancy control |
Sequence: (in bold interface residues) | 1 MADTSSRTDVSTDGDTDHRDLGFYYLYNVTPGRLVPESLGKTWGILPSDRGHMHAAASDS 60 61 SDRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVF 120 121 ISSSGDQAHSTGGNGALAFDAEHSRWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMAH 180 181 YEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQVM 240 241 GINSLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSDNVASYMGQMAMAMGQLGT 300 301 LEGFIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE |
Interface Residues: | 51, 79, 82, 83, 86, 87, 91 |
3D-footprint Homologues: | 2pyl_A, 1dh3_C |
Binding Motifs: | M0183 rrTGACGTCAkCawy M0186 drTGACGTCAkCawy |
Related annotations: | PaperBLAST |
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