Transcription Factor
| Accessions: | T069880_1.02 (CISBP 1.02) |
| Names: | NCU02173, T069880_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF,Zinc cluster |
| Length: | 1233 |
| Pfam Domains: | 119-141 Zinc finger, C2H2 type 147-169 Zinc finger, C2H2 type 190-224 Fungal Zn(2)-Cys(6) binuclear cluster domain 500-756 Fungal specific transcription factor domain |
| Sequence: (in bold interface residues) | 1 MTTEQNGIDILCDAAGSDLLLSSLDYATNTASSTSSASASASASANHPHPPPIAVIPAAV 60 61 PPSSTLPPALPDTPPLHGHHHHQQQQQQQQQQQTAGPPRAKRPKTESLPSSAPAPTSNHV 120 121 CQICKRVYERADHLTRHLRSHENARQYQCTRCPKRFNRADLLTRHETTHDRDNDGKGRAI 180 181 IRRSDRAAEACLNCAMSKAKCDDMKPCTRCRLKNLVCETSNKKTPQYRTADGTDAGSVFT 240 241 PSENGTPIAASASMTPVDGTMSSYGGFNGGYGMPPAKQSTSYGHAQQHHLQHPYPPAHQH 300 301 PHQGIGAMNDLHLIAGPMMNALPEDLLYPVHSNPTNPWFQDIDFTSWDINFDGFSVPQID 360 361 SYSQSPQSTTDTATTSSRPTAHRKTSHRDPARRHAAFKRSPWLWEPADKQDYVRKETEAG 420 421 LRNLDEDAVTAIAQSRLPSRPSTLMKKIKIDSGTRDRLFAIVLSQINDPHRVPSFPSLEV 480 481 LNFLLQAHLVHDEYQCDSWIHSPSLNPAEMLPELLGAIVANGASFIAVPAIWQFGLSMQE 540 541 IVRTRMNSLFESQNSNTRKLECLQSFALHLAIGMWSGFKRKTELAEAFLQPLLIMMRRAG 600 601 VYTAAVYTQADLPSVLPQASDTPEVLERKWRTFINRESYKRLALHMFLHDVQTSVTLQTT 660 661 PLLSFTELCFSLPSSRDLWKAPSAKAWRDLHLMKRAPPPDRPMPRLNEIMHCPGLLDDFV 720 721 DFVDIELVNTAVLHSFWGQISAYRYGMRLYQEPSTVASMSGNYGHYSQRNFSNHREGLKA 780 781 MHRELYSDAQDFAASVVYVHKSQLYTPVSHRRYPIPFPAPEGSHATSPAPNISSPVSIAN 840 841 SNMPITFEMFMVALHVDLNQLQSYAGKAGEEETRRASAYFLHQDPYSGTGGEGNGRGGTN 900 901 GGGWVRSTDARYAVWHAGQVFRAARALPPTGLRGFNAMAVYFASLTLWVYGLLGGPNPGS 960 961 PSLPSLFWGSGEHEMGRGGSGVSGGFGMGHHGQQPFNGGGMEDPRRSSVTVPLPSGHGYQ 1020 1021 MQTPHQQQQQHPPSQTLPSQQPPPPSHQYQQPPDVPFAILDGEETREIRTFLQTGRGIPA 1080 1081 LTISQQPPHPSGPSNTMSILNPVVESLLANPFLPLQTACSIFRENFPSLSHSESEPLPPL 1140 1141 VESLGTLLKDLGRGSTHGGSRAGSSAGDDEEELERDDDDDDEEQDGDRDEGRGGTASRER 1200 1201 REDGDGERRRWENKTTGVGAGVKEEDRRKERGN |
| Interface Residues: | 129, 130, 131, 132, 133, 135, 136, 137, 157, 158, 159, 160, 161, 162, 163, 164, 165, 168, 172, 174, 175, 177, 178, 182, 184, 185, 186, 197, 198, 199, 200, 202, 203, 224 |
| 3D-footprint Homologues: | 7y3l_A, 1tf3_A, 3uk3_C, 1g2f_F, 7n5w_A, 6blw_A, 5k5i_A, 2lt7_A, 8ssu_A, 1ubd_C, 6ml4_A, 2gli_A, 8gn3_A, 1llm_D, 7txc_E, 5kkq_D, 2wbs_A, 4x9j_A, 2jpa_A, 5kl3_A, 2drp_D, 7ysf_A, 1f2i_J, 6u9q_A, 6a57_A, 5ei9_F, 2kmk_A, 8ssq_A, 7w1m_H, 6jnm_A, 5v3j_F, 4m9v_C, 8h9h_G, 6e94_A, 7y3m_I, 8cuc_F, 5yj3_D, 1tf6_A, 5yel_A, 6o19_A, 2er8_C, 1zme_D, 1d66_B, 7uik_T, 6gys_C, 3coq_A |
| Binding Motifs: | M0571_1.02 csgGTsSGGrmt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.