Transcription Factor

						

			
Accessions: T161793_1.02 (CISBP 1.02)

			
Names: NCU07374, T161793_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Zinc cluster
Length: 755
Pfam Domains:     41-77 Fungal Zn(2)-Cys(6) binuclear cluster domain
Sequence: 
(in bold interface residues)		   1 MSDFAAYPVQTSSPASSNGTVLPPSLPGTSLRKERGAIAAQACDTCRARKQKCDEQRPKC   60
  61 GTCQKFNVECHYREPQPTKKDKTLLEILDRLKVLDVLNVLENKIDHLSWRMDHLVATCHP  120
 121 NTNSTTTATHLAPPPPLTTSTGHSVGIHGVHPAVAHHHSPEGLSNGGPHALPNIASLTED  180
 181 HYQYVSAVHQMLAWPAIQGHLTTIQPKCPTRNLKSVATDGPAMALGAHLPMDHTIPISVQ  240
 241 TGENYNLGPVSAPISAFGLDWDIMQTLSKAYFDTISLLHPILDRHTFLTQTLPTLFKNGV  300
 301 DHKLQSTIAFLVFALGEVALGNYRGAPINVHGGRPSGMRGGSKSHPPGITLFNEARKRLG  360
 361 FSVAETSLEMVQAYTLASCLNLELGFPLTGLEKMENVVSLPDFSTSFTDYDYVSNQETQY  420
 421 QEHFASQIALRRLLVEFHGTLSRSPYNTTAPSTSSTPNRIRHMATDLERWRSYLPSNLQW  480
 481 QEDTPGAFPSSATAYNGPSIYSPVTTATATTTTNSTPAVSPMLPTPQAGTTFMSSVSPGV  540
 541 SRASMTGSGVMPQALANVTASGLRSPPMSHQQPILNSGLGPQHQPVPQPQMFTADLDAPP  600
 601 IRYPYAHDVQVALLRSRYYYAKYLIHRPFLYKALHHPDAMMQEDAIGAAECLKASLKWPI  660
 661 AMSPASLQKRFVPCPFFFTQNFFGILVLLHLVLSNKVPILTKIKDTLCGGERFELEAKKT  720
 721 VELYVDWIRDLKDVEPSAVWDWDVVCAMYGLEGNG
Interface Residues: 38, 47, 49, 50, 51, 52, 65, 66, 76
3D-footprint Homologues: 6o19_A, 1f5e_P, 1pyi_A, 2er8_C, 1hwt_C, 7uik_T, 1d66_B, 3coq_A
Binding Motifs: M1756_1.02 scyCCGry
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.