Transcription Factor
| Accessions: | T049074_1.02 (CISBP 1.02) |
| Names: | Gli3, T049074_1.02; |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:ChIP-seq, family:C2H2 ZF |
| Length: | 596 |
| Pfam Domains: | 513-540 Zinc finger, C2H2 type 533-558 Zinc-finger double domain 546-570 C2H2-type zinc finger 546-570 Zinc finger, C2H2 type 562-589 Zinc-finger double domain 576-596 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MEAQAHSSTATERKKAENSIGKCPTRTDVSEKAVASSTTSNEDESPGQIYHRERRNAITM 60 61 QPQSVQGLNKISEEPSTSSDERASLIKKEIHGSLPHLAEPSLPYRGTVFAMDPRNGYMEP 120 121 HYHPPHLFPAFHPPVPIDARHHEGRYHYDPSPIPPLHVPSALSSSPTYPDLPFIRISPHR 180 181 NPTAASESPFSPPHPYINPYMDYIRSLHSSPSLSMISAARGLSPTDAPHAGVSPAEYYHQ 240 241 MALLTGQRSPYADILPSAATAGAGAIHMEYLHAMDSTRFPSPRLSARPSRKRTLSISPLS 300 301 DHSFDLQTMIRTSPNSLVTILNNSRSSSSASGSYGHLSASAISPALSFTYPSAPVSLHMH 360 361 QQILSRQQSLGSAFGHSPPLIHPAPTFPTQRPIPGIPTVLNPVQVSSGPSESSQSKPTSE 420 421 SAVSSTGDPMHNKRSKIKPDEDLPSPGSRGQQEQPEGTTLVKEEADKDESKQEPEVIYET 480 481 NCHWEGCTREFDTQDQLVHHINNDHIHGEKKEFVCRWLDCSREQKPFKAQYMLVVHMRRH 540 541 TGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKH |
| Interface Residues: | 493, 495, 496, 498, 499, 501, 502, 503, 508, 518, 523, 525, 526, 528, 529, 530, 531, 532, 535, 541, 557, 558, 559, 560, 561, 562, 564, 565, 566, 569, 588, 589, 590, 591, 592, 593, 594, 595, 596 |
| 3D-footprint Homologues: | 6wmi_A, 5ei9_F, 5kkq_D, 2jpa_A, 1ubd_C, 2kmk_A, 6jnm_A, 3uk3_C, 8cuc_F, 7y3l_A, 7n5w_A, 6blw_A, 1tf3_A, 1tf6_A, 7ysf_A, 1mey_C, 6ml4_A, 2gli_A, 6u9q_A, 2i13_A, 1g2f_F, 5kl3_A, 7eyi_G, 5v3j_F, 8h9h_G, 6a57_A, 6e94_A, 5und_A, 4x9j_A, 7w1m_H, 5yj3_D, 1llm_D, 5k5i_A, 1f2i_J, 5yel_A, 8ssq_A, 7txc_E, 2wbs_A, 4m9v_C, 2lt7_A, 7y3m_I |
| Binding Motifs: | M6120_1.02 sTGGGTGGtCy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.