Transcription Factor
| Accessions: | T100216_1.02 (CISBP 1.02) |
| Names: | T100216_1.02;, ZC123.3 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 1623 |
| Pfam Domains: | 103-125 Zinc finger, C2H2 type 157-181 Zinc-finger of C2H2 type 157-178 C2H2-type zinc-finger domain 256-278 C2H2-type zinc-finger domain 529-562 C2H2 type zinc-finger (2 copies) 533-611 C2H2 type zinc-finger (2 copies) 533-556 Zinc-finger of C2H2 type 534-552 C2H2-type zinc finger 582-606 Zinc finger, C2H2 type 582-603 C2H2-type zinc finger 864-920 Homeobox domain 1040-1096 Homeobox domain 1118-1139 C2H2-type zinc finger 1235-1264 C2H2 type zinc-finger (2 copies) 1347-1403 Homeobox domain 1416-1446 C2H2 type zinc-finger (2 copies) 1417-1436 Zinc-finger of C2H2 type 1418-1436 C2H2-type zinc finger 1554-1575 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MDVALLTMDDNNKPPTSSESTESRETSPPMMPDSAEIMRLLTDPSTAQMFANENTKCQLG 60 61 RILAASGFDEASLSSSFPFDPTLGAFADISQFSSLRNSSKTLKCPKCNWHYKYQETLEIH 120 121 MKEKHNDVDVKCMFCAENRPHPKLARGETYSCGYKPYRCDLCRYSTTTKGNLSIHMQSDK 180 181 HLHAVQELPNSIEFAANFACGAPVSRSSPIEESDGSLVCLICGIFATESIAEMMEHVEQD 240 241 RSRTFQGDVTVLNGSFRCHLCPYNTTLKANFQLHTRTDKHLQKVQIDKSGDQIFKARIHN 300 301 FFLRNFEEVSNSPNSLLFLNLIFDIPDFKTMEDAAYACAGCEFTTKDVSDFEEHAKGHEE 360 361 EAGASSQKACALCLEPTDDLEKHLVEQHRIAESAIEKFLLTERTAKVSIFMNLKLSNCRT 420 421 SCPFQPQKQKRRVHRRRSRAQNSRIAARGARWRSEASRSCRRIPFSTCSTRSTSAPRVAI 480 481 RLMRILLWVAWILKQGGLDFSQGGLDFIQGGLDFYTGGLDSLQTHMLEHTKEECEMCSET 540 541 FATKEAFLSHLNSARHLQQAKKQLENSLVDLNSQDVEKQRIYVCNVCKQSYPQAANLDVH 600 601 MRSMTHQSRMSRLSELVATGELNGEKAVFEQPGIPAPTINSFIETTTNQSSLNDLMSLLT 660 661 RSESDEIREEVNGLQVMTQIKVYGESKITSLVPELAGKIDNIALFDDSRAAEVSKIDCSA 720 721 CGQQISGILALNLHYEESHSSKIPSDVLRKFGERLLAALEDGLSRENSVKNGSQSPLSND 780 781 DEPMEKKMRLENMLPEMDKNAAASQFAMFQQMMNCFPFMAPPGTSSGNFGFSPEMINQLM 840 841 NPAAAAAAATAAAAAHAANNSPAKRARTRITDDQLKVLRQYFNINNSPSEAQIKEMSQKA 900 901 SLPEKVIKHWFRNTLFKERQRDKDSPYNFSIPPQMGIDLDIYEKTGETKVLSLSNEAPKS 960 961 ELSSARATPTIPTPIPLIVEEKKPEPKSQTPSSSSSQLNLQAMLSQMQGSFFDASNFMSA 1020 1021 SVNPMTPSTPSCNTSSSGRRANRTRFTDFQLRTLQQFFDKQAYPKDDDLEALSKKLQLSP 1080 1081 RVIVVWFQNARQKARKIYENQPNHESSDRFVRTPGSNFQCKRCSQVFQRYYELIQHQQKK 1140 1141 CYKDDVAALASDNKSVEESLTEEEKSQLLAQQQVAQLASTLELPKFQPAELLKMIGANSV 1200 1201 TPSSSAASQKSSNDVLLKMCESIVGGSTPSTSSFHKLCIFCAQDFKDRSAMSEHMAQKHP 1260 1261 QHMLLPNFDLDMMPDAGGAELLMDLKDSALDLSGSSVDYRDSISTSPSRSEDDVLTEALD 1320 1321 DSAFAAFGLQLANSTSGSECRSPASNKRFRTHLTPMQVQMMKSVFNEYKTPSMAECELLG 1380 1381 KEVGLHKRVVQVWFQNARAKERKTRGAVDEDSRSGELHCEICDKTFATRLSLQDHLFAEQ 1440 1441 HIEFLRNNLKREGVSELTTASVTECSPEKKAKLPNPLDLASFPFLNTFDIQIYGTPIAFL 1500 1501 QVPDEIKKQITDDITAGKSRTTFSQDGFPLDKLKESLPEDEKSNLTVTQKDVGWACPACT 1560 1561 FVFQEEKKLREHQKAMCQSDKTLTLVQTHYSCKSCQSDFCLQSEYQFHLSMPPHTTTTTT 1620 1621 TTP |
| Interface Residues: | 113, 115, 116, 119, 139, 140, 142, 143, 146, 168, 169, 170, 171, 173, 174, 593, 596, 865, 866, 867, 909, 912, 913, 916, 917, 920, 1040, 1041, 1042, 1043, 1081, 1082, 1084, 1085, 1088, 1089, 1092, 1093, 1094, 1096, 1322, 1323, 1347, 1348, 1349, 1350, 1388, 1391, 1392, 1395, 1396, 1398, 1399, 1400, 1403 |
| 3D-footprint Homologues: | 8gn3_A, 5kkq_D, 8cuc_F, 7n5w_A, 8h9h_G, 7y3l_A, 7y3m_I, 6u9q_A, 3uk3_C, 2gli_A, 1jgg_B, 1puf_B, 1b72_A, 1ig7_A, 8pmf_A, 8ejp_B, 1puf_A, 1fjl_B, 3cmy_A, 1zq3_P, 1nk2_P, 2ld5_A, 2r5y_A, 5flv_I, 8osb_E, 4cyc_A, 2d5v_B, 3lnq_A, 7psx_B, 3a01_E, 5jlw_D, 3rkq_B, 8eml_B, 4xrs_G, 7xrc_C, 2xsd_C, 1le8_A, 5zjt_E, 8bx1_A, 3d1n_M, 5zfz_A, 6a8r_A, 2lkx_A, 6es3_K, 7q3o_C, 2hos_A, 6m3d_C, 5hod_A, 1au7_A, 9b8u_A, 8ik5_C, 2hdd_A, 6wig_A, 1e3o_C, 8g87_X, 1o4x_A, 1du0_A, 4qtr_D |
| Binding Motifs: | M1142_1.02 artTAATTAgd |
| Related annotations: | PaperBLAST |
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