Transcription Factor
| Accessions: | Q9SLH1 (JASPAR 2024), T07980 (AthalianaCistrome v4_May2016) |
| Names: | Myb domain protein 81, Myb family transcription factor, Q9SLH1_ARATH, AT2G26960, MYB81, T07980; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 427 |
| Pfam Domains: | 22-69 Myb-like DNA-binding domain 25-85 Myb-like DNA-binding domain 75-118 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGKVRQDSGSDDDNSIKKSFTKGPWTQAEDNLLIAYVDKHGDGNWNAVQNNSGLSRCGKS 60 61 CRLRWVNHLRPDLKKGAFTEKEEKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRL 120 121 KRLQRLGLPVYPDEVREHAMNAATHSGLNTDSLDGHHSQEYMEADTVEIPEVDFEHLPLN 180 181 RSSSYYQSMLRHVPPTNVFVRQKPCFFQPPNVYNLIPPSPYMSTGKRPREPETAFPCPGG 240 241 YTMNEQSPRLWNYPFVENVSEQLPDSHLLGNAAYSSPPGPLVHGVENFEFPSFQYHEEPG 300 301 GWGADQPNPMPEHESDNTLVQSPLTAQTPSDCPSSSLYDGLLESVVYGSSGEKPATDTDS 360 361 ESSLFQSFTPANENITGKTCFLTLYALHALHCLCNQFKKSPLLHLHDKLNWCNKFRFNSF 420 421 KSGTHIL |
| Interface Residues: | 22, 57, 58, 59, 60, 62, 63, 67, 68, 109, 110, 113, 114, 117, 118, 119 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 2kdz_A, 6kks_A, 1mse_C, 3zqc_A, 7xur_A |
| Binding Motifs: | M0529 / MA1175.1 sTAACcGwwTy M0553 wyystAACcGtwwy MA1175.2 TAACcGwwT |
| Binding Sites: | MA1175.1.1 / MA1175.1.2 MA1175.1.10 / MA1175.1.19 MA1175.1.11 MA1175.1.12 MA1175.1.13 MA1175.1.14 MA1175.1.15 MA1175.1.16 MA1175.1.17 MA1175.1.18 / MA1175.1.9 MA1175.1.20 MA1175.1.3 MA1175.1.4 MA1175.1.5 MA1175.1.6 MA1175.1.7 MA1175.1.8 MA1175.2.9 MA1175.2.3 MA1175.2.1 MA1175.2.10 / MA1175.2.20 MA1175.2.11 MA1175.2.12 MA1175.2.13 MA1175.2.14 MA1175.2.15 MA1175.2.16 MA1175.2.17 MA1175.2.18 MA1175.2.19 MA1175.2.2 MA1175.2.4 MA1175.2.5 MA1175.2.6 MA1175.2.7 MA1175.2.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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