Transcription Factor

						

			
Accessions: T007612_1.02 (CISBP 1.02)

			
Names: ARID3A, T007612_1.02;
Organisms: Procavia capensis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:ARID/BRIGHT
Length: 590
Pfam Domains:   236-324 ARID/BRIGHT DNA binding domain
Sequence: 
(in bold interface residues)		   1 MKLQAVMETLLQRQQRARQELEDRQQPPAEPPLPPARDRSGPTDEDMEPEISRIQRTQMA   60
  61 LAAMHAATAGLVPPSPGSSEDSPPGSEDEDTPWWGASGXXXXXXXXXXXXXXXXXXXXXX  120
 121 XXXXXXXXXXXXXXXXXXXXXXXXXXEEEEEEEEEGLGPPGSAGLGSGALFPPKSQPTQP  180
 181 FRGDGAPRALGGQERQGPGPAHPGGAAHVAPALQPPDHGDWTYEEQFKQLYELDGDPKRK  240
 241 EFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLN  300
 301 LPTSITSAAFTLRTQYMKYLYSYECEKRGLSNPNELQAAIDSNRREGRRQSFGGPLFTYS  360
 361 PGGAHGVLSSAKLPVPSLGLTTGTNGSSITPAPKIKKEEDSAIPITVPGRLPVPLAGHPV  420
 421 VAAQAAAVQAAAAQAAVAAQAAALEQLREKLESGEPPEKKIALVSDEQQRLMQRALQQNF  480
 481 LAMTAQLPMSIRINSQASESRQDAAVSLASANGTSSISMSVEMNGVVYTGVLFAQPPAPT  540
 541 PPSAPGKGGGGSRAGSSGTGGGGGGSLGSQPGPAGLSTAPTSSTSNNSLP
Interface Residues: 293, 306, 307, 310, 311, 345
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0109_1.02 wtttrATwm
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.