Transcription Factor

						

			
Accessions: T049238_1.02 (CISBP 1.02)

			
Names: Dnajc21, T049238_1.02;
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 531
Pfam Domains:      4-66 DnaJ domain
  308-351 C2H2 type zinc-finger (2 copies)
  314-338 Zinc-finger of C2H2 type
  314-339 Zinc-finger double-stranded RNA-binding
  483-513 C2H2 type zinc-finger (2 copies)
Sequence: 
(in bold interface residues)		   1 MKCHYEALGVRRDASEEELKKAYRKLALRWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQ   60
  61 ERAWYDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDERGFYAVYRVVFELIAK  120
 121 EELECMSEGDVEDFPTFGDSQSDYDTVVHPFYAHWQSFCTQKNFSWKEEYDTRQASNRWE  180
 181 KRAMEKENKKIRDRARKEKNELVRQLVAFIRKRDKRVQAHRKLVEEQNAEKARKAEEMRR  240
 241 QQKLKQAKLAEQYREQSWMTMANLEKELQEMEARYEKEFGDGSDENEVEDQEPRNGLDGK  300
 301 DSEEAEEAELYQDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQQLEEEEEQFSGVQ  360
 361 MDENVLNANSEEEMEDTPKQKLSKKQKKKKQKSAQNFDDNFNENGTEEGGKIAPEKTKSN  420
 421 EDNAKELENRPQENTCITETTEACEDPKSEAKSVPKSKGKKTKDVKKSVKAPAEAQPVSD  480
 481 VLISCATCHSEFPSRNKLFDHLKATGHARAPSATASLNSVTRNKKEKRRSR
Interface Residues: 324, 327, 328, 331, 484, 485, 486, 487, 489, 490
3D-footprint Homologues: 7y3l_A, 8cuc_F, 2i13_A, 4gck_A
Binding Motifs: M0427_1.02 rgkrdkryrr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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