Transcription Factor
| Accessions: | T18388 (AthalianaCistrome v4_May2016), O65508 (JASPAR 2024) |
| Names: | AT4G36160, T18388;, VND2, ANAC076, NAC domain-containing protein 76, NAC76_ARATH, Protein VASCULAR RELATED NAC-DOMAIN 2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 377 |
| Pfam Domains: | 10-139 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MESVDQSCSVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCR 60 61 IGYEERNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYK 120 121 GRAPNGQKTDWIMHEYRLESDENAPPQEEGWVVCRAFKKKPMTGQAKNTETWSSSYFYDE 180 181 LPSGVRSVTEPLNYVSKQKQNVFAQDLMFKQELEGSDIGLNFIHCDQFIQLPQLESPSLP 240 241 LTKRPVSLTSITSLEKNKNIYKRHLIEEDVSFNALISSGNKDKKKKKTSVMTTDWRALDK 300 301 FVASQLMSQEDGVSGFGGHHEEDNNKIGHYNNEESNNKGSVETASSTLLSDREEENRFIS 360 361 GLLCSNLDYDLYRDLHV |
| Interface Residues: | 79, 84, 86, 95, 97, 99, 119, 123, 124, 125, 128 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0642 CkTraaahwcAmGYA M0680 TTGCKTgwwyydyAmGywAycty MA2036.1 / UN0348.1 wwcAAGCAAymw MA2036.2 cAAGCAA |
| Binding Sites: | MA2036.1.7 / UN0348.1.8 MA2036.1.8 / UN0348.1.9 MA2036.1.9 / UN0348.1.10 UN0348.1.14 MA2036.1.1 / UN0348.1.1 UN0348.1.15 MA2036.1.5 / UN0348.1.5 MA2036.1.10 / UN0348.1.11 UN0348.1.12 MA2036.1.11 / UN0348.1.13 MA2036.1.12 / UN0348.1.16 MA2036.1.13 / UN0348.1.17 MA2036.1.14 / UN0348.1.18 MA2036.1.15 / UN0348.1.19 MA2036.1.2 / UN0348.1.2 MA2036.1.17 / UN0348.1.20 MA2036.1.3 / UN0348.1.3 MA2036.1.4 / UN0348.1.4 MA2036.1.6 / UN0348.1.6 UN0348.1.7 MA2036.1.16 MA2036.1.18 MA2036.1.19 MA2036.1.20 MA2036.2.1 / MA2036.2.11 / MA2036.2.12 / MA2036.2.13 / MA2036.2.14 / MA2036.2.20 / MA2036.2.5 / MA2036.2.7 / MA2036.2.8 / MA2036.2.9 MA2036.2.15 / MA2036.2.6 MA2036.2.10 / MA2036.2.2 MA2036.2.16 MA2036.2.17 / MA2036.2.3 MA2036.2.18 / MA2036.2.19 MA2036.2.4 |
| Publications: | Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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