Transcription Factor
| Accessions: | UP00047A (UniPROBE 20160601) |
| Names: | c-Krox, Kruppel-related zinc finger protein cKrox, MGC102577, T-helper-inducing POZ/Kruppel-like factor, Thpok, Vzinc finger and BTB domain containing 7B, Zbtb7b, Zfp-67, Zfp67, Zinc finger and BTB domain-containing protein 7B, Zinc finger protein 67, Zinc finger protein Th-POK |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | Vzinc finger and BTB domain containing 7B: Mus musculus hypothetical gene supported by NM_009565 |
| Length: | 139 |
| Pfam Domains: | 33-55 Zinc-finger double domain 44-66 C2H2-type zinc finger 44-66 Zinc finger, C2H2 type 59-83 Zinc-finger double domain 72-94 C2H2-type zinc finger 72-94 Zinc finger, C2H2 type 86-110 Zinc-finger double domain 100-120 C2H2-type zinc finger 100-120 Zinc finger, C2H2 type 100-122 Zinc-finger of C2H2 type |
| Sequence: (in bold interface residues) | 1 DGQDKLVRKRRSQMPQECPVCHKIIHGAGKLPRHMRTHTGEKPFACEVCGVRFTRNDKLK 60 61 IHMRKHTGERPYSCPHCPARFLHSYDLKNHMHLHTGDRPYECHLCHKAFAKEDHLQRHLK 120 121 GQNCLEVRTRRRRKDDVAA |
| Interface Residues: | 4, 5, 9, 12, 13, 26, 27, 28, 29, 30, 32, 33, 35, 36, 37, 39, 44, 54, 55, 56, 57, 58, 60, 61, 62, 65, 82, 83, 84, 85, 86, 87, 88, 89, 90, 93, 110, 111, 112, 113, 114, 116, 117 |
| 3D-footprint Homologues: | 2i13_A, 1yuj_A, 7n5w_A, 3uk3_C, 8cuc_F, 7y3l_A, 6ml4_A, 5v3j_F, 6blw_A, 5kkq_D, 1f2i_J, 5ei9_F, 5k5i_A, 8ssq_A, 7w1m_H, 1llm_D, 8ssu_A, 8h9h_G, 7eyi_G, 7y3m_I, 6e94_A, 7ysf_A, 6wmi_A, 1tf6_A, 2jpa_A, 1ubd_C, 2kmk_A, 1tf3_A, 6jnm_A, 4x9j_A, 1mey_C, 6u9q_A, 5yel_A, 7txc_E, 5kl3_A, 1g2f_F, 5und_A, 2gli_A, 5k5l_F, 4m9v_C, 2lt7_A, 6a57_A, 8gn3_A, 2wbs_A, 2drp_D, 5yj3_D |
| Binding Motifs: | UP00047A_1 rrgCCCCCCwaawat UP00047A_2 ywkrvGACCACCaktry |
| Binding Sites: | AAGCCCCC ACCCCCCA AGACCCCC AGCCCCCT AGGGGGGG AGGGGGTC ATGGGGGG CCCCCCAA CCCCCCCA CCCCCCCC CCCCCCTC CGACCCCC CGCCCCCC CGGGGGGC CGGGGGTC GACCCCCA GACCCCCC GCCCCCCA GCCCCCCC GGACCCCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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