Transcription Factor

						

			
Accessions: 5ze0_N (3D-footprint 20231221)

			
Names: High mobility group protein 1, High mobility group protein B1, HMG-1, HMGB1 A-B box, HMGB1_MOUSE
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P63158
Length: 118
Pfam Domains:      1-63 Domain of unknown function (DUF1898)
     4-64 HMG (high mobility group) box
   64-118 HMG (high mobility group) box
   64-117 Domain of unknown function (DUF1898)
Sequence: 
(in bold interface residues)		   1 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAKEKGKFEDMAKADKARYE   60
  61 REMKRPPSAFFLFCSEYRPKIKGEIGDVAKKLGEMWNNTDDKQPYEKKAAKLKEKYEK
Interface Residues: 5, 7, 8, 11, 29, 33, 65, 68, 70, 71, 74, 78, 85, 86, 89
3D-footprint Homologues: 1j5n_A, 1ckt_A, 7m5w_A, 1qrv_A, 4s2q_D, 2gzk_A, 4y60_C, 3f27_D, 6jrp_D, 1o4x_B, 3u2b_C, 1hry_A
Binding Motifs: 5ze0_N CTnnnnnnnnacTT
Binding Sites: 5ze0_G
5ze0_M
			
Publications: Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.