Transcription Factor

						

			
Accessions: 6ycq_A (3D-footprint 20231221)

			
Names: ARFA_ARATH, Auxin response factor 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q8L7G0
Length: 347
Pfam Domains:   116-217 B3 DNA binding domain
  242-324 Auxin response factor
Sequence: 
(in bold interface residues)		   1 GKPGGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFN   60
  61 LPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTL  120
 121 TASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHL  180
 181 LTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLA  240
 241 TAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRF  300
 301 SGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPL
Interface Residues: 123, 128, 129, 130, 132, 173, 175, 176, 178
3D-footprint Homologues: 6ycq_A, 7et6_A, 6sdg_B
Binding Motifs: 6ycq_A TTGtCGgC
6ycq_AB TGTCGGtnnnnnGCCGACAA
Binding Sites: 6ycq_C
6ycq_D
			
Publications: Freire-Rios A, Tanaka K, Crespo I, van der Wijk E, Sizentsova Y, Levitsky V, Lindhoud S, Fontana M, Hohlbein J, Boer DR, Mironova V, Weijers D. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis. Proc Natl Acad Sci U S A 117:24557-24566 (2020). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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