Transcription Factor

						

			
Accessions: T24915 (AthalianaCistrome v4_May2016), Q9FK61 (JASPAR 2024)

			
Names: AT5G18090, T24915;, Y5809_ARATH
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:ABI3-VP1
Length: 301
Pfam Domains:    18-110 B3 DNA binding domain
  217-299 B3 DNA binding domain
Sequence: 
(in bold interface residues)		   1 MKNKAFGQIMDDAENPGFFKILRSADLSSEIMRGIPLNFIKSISEEELSAKMLLKVSWGS   60
  61 SWPIKICRNPSFYFMEKKGWDQFLSDNGLGNDEFLTFTHQGNMCFTVDIYQIDGKELLTP  120
 121 RRSATIASSSGRNKREQRNNIYKDVKEEEDIESWSESSYPGHKTAESTGRRQRLSLSNKK  180
 181 AKETEKSKKKKMKVESISYDSQDDSLSLVPEFTLTIKKSYLIFLGIPKMFEELHMPTEAT  240
 241 MFKIHDPEGKRSWDVMYKFSNNQTRFCAGWIRLAKELGLEIGDVCTFTLIKPTEMLVRVS  300
 301 K
Interface Residues: 219, 224, 225, 260, 261, 262, 263, 265, 266
3D-footprint Homologues: 6fas_B, 7et6_A, 6j9c_D
Binding Motifs: M0009 gawGATGAArmarad
UN0408.1 htytkyTTCATCwtc
UN0408.2 TTCATC
UN0847.1 TTCATC
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.