Transcription Factor
| Accessions: | T058067_1.02 (CISBP 1.02) |
| Names: | l(3)neo38, T058067_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:B1H, family:C2H2 ZF |
| Length: | 447 |
| Pfam Domains: | 303-325 C2H2-type zinc finger 331-353 Zinc finger, C2H2 type 331-353 C2H2-type zinc finger 345-370 Zinc-finger double domain 359-379 C2H2-type zinc finger 359-381 Zinc finger, C2H2 type 374-397 Zinc-finger double domain 388-409 C2H2-type zinc finger 388-409 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MMNFSAFGGPFSGIHQFAAKFDAQTPGAFGTPPAAAANAAAAAAAAGTDNHVQRYQTNGN 60 61 HFNQNVPNVSAANNMQYGQNISIPYSQPQGDLNFLNAAAAADHKGKIHPKIERDREEVLN 120 121 QQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYSETIKKESTGDVLKNGTN 180 181 LASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMTNMTDANGAALTNGASNGVNGNANG 240 241 TVTNGGAGAVSSSGSVGTTNASGGTGTASGKKTKKKKPPKEKKPRPKPGEIRETKALDGS 300 301 TLYCCPECQMAYPDRSLIEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHV 360 361 CNICMKSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARRVKSEVSA 420 421 QNVNGSAGGGGGGGGGNSAQSNALHGS |
| Interface Residues: | 292, 313, 314, 315, 316, 317, 319, 320, 322, 323, 326, 331, 340, 341, 342, 343, 344, 345, 347, 348, 349, 350, 352, 369, 370, 371, 372, 373, 374, 375, 376, 377, 397, 398, 399, 400, 401, 403, 404, 408 |
| 3D-footprint Homologues: | 5v3j_F, 2i13_A, 5kkq_D, 5und_A, 6ml4_A, 8gn3_A, 5ei9_F, 7eyi_G, 2lt7_A, 1tf6_A, 6e94_A, 7ysf_A, 6wmi_A, 2jpa_A, 1ubd_C, 7w1m_H, 2kmk_A, 6jnm_A, 1tf3_A, 7n5w_A, 1mey_C, 2drp_D, 5k5i_A, 2gli_A, 1g2f_F, 6blw_A, 6u9q_A, 5yel_A, 4x9j_A, 7txc_E, 5kl3_A, 8ssq_A, 4m9v_C, 8h9h_G, 6a57_A, 3uk3_C, 8cuc_F, 7y3l_A, 1f2i_J, 1llm_D, 2wbs_A, 7y3m_I, 5yj3_D |
| Binding Motifs: | M5065_1.02 rGGGRKkGGGGGsmbrkgt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.