Transcription Factor

						

			
Accessions: T060943_1.02 (CISBP 1.02)

			
Names: NCU02487, T060943_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 610
Sequence: 
(in bold interface residues)		   1 MHRGTYESTQPRPIPAPCRLFSTNLVMMEDFIRPIKRDNASYVTLSQAFMPGNHRSLCPH   60
  61 EEKVVTDGTIAPIVLQEVNVERKRSLGSKMRDTFTPRKRDNNYRANTLSKIATYQPGLTL  120
 121 HARTHTAASVESVVQGIAMIGCPGPHSTMPYLGHTAPGDSFSLHKLPTTTDMVDVNSELF  180
 181 RQGFNAEEMSDLQSIVSSIAASSTTEVEPSQRASTNTSRTTLFPPSVSHYQSPTPPIQRN  240
 241 GNIITSQPYPFTSQLPIPTGALQLDGLPPPAAMSLDDLVITNSVPMSQTSMSPALQVDDY  300
 301 SWWSLKLTGGIQESTPDLSGTCSSLHVQMPPALEISRNSGKDIPTLGTLVRTRDVDEPQI  360
 361 HQHYYEPGPGTHQGMTRSPSLDLVETMQPGNPLTGTRTRGEIGQQPSTTDGNHTTPGASK  420
 421 AKISSYFEHHSEHQFEHLEQDQRQRQHSHAHRTTGIAIHYCRPNNSTQQDLSQGQNLGSG  480
 481 SNENDLICDECQWKPRGVRGNLKGYLRKHKNTHKGLRLSCHVPGCTKTFSRLDNLKKHKK  540
 541 DRHGIDDTAMGGGISRGGVLPLKRIASTEAKEQGGRTNGNGAKRPDTSDSQQRLRDLSGD  600
 601 YTMLWPALHF
Interface Residues: 446, 469, 470, 473, 497, 499, 501, 502, 503, 504, 505, 506, 507, 508, 530, 531, 532, 533, 534, 535, 536, 537, 541
3D-footprint Homologues: 1ubd_C, 5yel_A, 2drp_D, 6blw_A, 2jpa_A, 1llm_D, 5kl3_A, 1tf3_A, 1tf6_A, 2gli_A, 2wbs_A
Binding Motifs: M0468_1.02 gmAGGrmcca
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.