Transcription Factor
| Accessions: | T049165_1.02 (CISBP 1.02) |
| Names: | Egr3, T049165_1.02; |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 387 |
| Pfam Domains: | 87-156 Domain of unknown function (DUF3446) 275-299 C2H2-type zinc finger 275-299 Zinc finger, C2H2 type 292-315 Zinc-finger double domain 305-327 C2H2-type zinc finger 305-327 Zinc finger, C2H2 type 319-343 Zinc-finger double domain 333-353 C2H2-type zinc finger 333-355 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSSDSVAHYNQMATENVMDIGLT 60 61 NEKPNPELSYSSSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGAL 120 121 STQTSTASMVQPPQGDVEAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAK 180 181 PALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIH 240 241 PGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHT 300 301 GHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKE 360 361 KKSEKGGAPSASSAPTVSLAPVVTTCA |
| Interface Residues: | 257, 261, 264, 267, 270, 286, 287, 288, 289, 290, 291, 293, 294, 315, 316, 317, 318, 319, 321, 322, 323, 343, 344, 345, 346, 347, 348, 349, 350, 351, 354 |
| 3D-footprint Homologues: | 8ssu_A, 5kkq_D, 8ssq_A, 7w1m_H, 5ei9_F, 5v3j_F, 6blw_A, 8gn3_A, 1tf3_A, 7n5w_A, 6jnm_A, 2kmk_A, 6u9q_A, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 1tf6_A, 2jpa_A, 1g2f_F, 7ysf_A, 6ml4_A, 1ubd_C, 8h9h_G, 6e94_A, 2lt7_A, 6a57_A, 8cuc_F, 7y3l_A, 3uk3_C, 1llm_D, 5yel_A, 2drp_D, 2wbs_A, 7txc_E, 5k5i_A, 4m9v_C, 7y3m_I, 5yj3_D |
| Binding Motifs: | M0414_1.02 rcGkGGGcgk |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.