Transcription Factor
| Accessions: | Q94JM3 (JASPAR 2024), T21371 (AthalianaCistrome v4_May2016) |
| Names: | ARF1-binding protein, ARF1-BP, ARFB_ARATH, Auxin response factor 2, Protein MEGAINTEGUMENTA, ARF2, AT5G62000, T21371; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:ARF |
| Length: | 859 |
| Pfam Domains: | 164-265 B3 DNA binding domain 290-372 Auxin response factor 641-823 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MASSEVSMKGNRGGDNFSSSGFSDPKETRNVSVAGEGQKSNSTRSAAAERALDPEAALYR 60 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120 121 LKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFS 180 181 VLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSK 240 241 RLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMF 300 301 TVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDP 360 361 TRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNIAPSS 420 421 PDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTESVECDAPENSVVWQSSAD 480 481 DDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPA 540 541 KRILSDSEGKFDYLANQWQMIHSGLSLKLHESPKVPAATDASLQGRCNVKYSEYPVLNGL 600 601 STENAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIP 660 661 LTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLSDQSKGSKSTNDHREQGRPFQTNNP 720 721 HPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKD 780 781 WLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGS 840 841 DAKDAKSASNPSLSSAGNS |
| Interface Residues: | 171, 176, 177, 178, 180, 221, 223, 224, 226, 838 |
| 3D-footprint Homologues: | 6sdg_B, 6ycq_A, 7et6_A, 4m8b_R |
| Binding Motifs: | M0141 / MA1206.1 wdsmGACAar MA1206.2 smGACA |
| Binding Sites: | MA1206.1.1 MA1206.1.10 MA1206.1.11 MA1206.1.12 MA1206.1.13 MA1206.1.14 MA1206.1.15 MA1206.1.16 MA1206.1.17 MA1206.1.18 MA1206.1.19 MA1206.1.2 MA1206.1.20 MA1206.1.3 MA1206.1.4 MA1206.1.5 MA1206.1.6 MA1206.1.7 MA1206.1.8 MA1206.1.9 MA1206.2.19 MA1206.2.1 MA1206.2.10 MA1206.2.11 MA1206.2.12 MA1206.2.13 MA1206.2.14 MA1206.2.15 MA1206.2.16 MA1206.2.17 MA1206.2.18 MA1206.2.2 MA1206.2.20 MA1206.2.3 MA1206.2.4 MA1206.2.5 MA1206.2.6 MA1206.2.7 MA1206.2.8 MA1206.2.9 |
| Publications: | Zhang JY, He SB, Li L, Yang HQ. Auxin inhibits stomatal development through MONOPTEROS repression of a mobile peptide gene STOMAGEN in mesophyll. Proc Natl Acad Sci U S A : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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