Transcription Factor
| Accessions: | T015135_1.02 (CISBP 1.02) |
| Names: | T015135_1.02;, Tcfe3 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 467 |
| Pfam Domains: | 241-294 Helix-loop-helix DNA-binding domain 326-466 Domain of unknown function (DUF3371) |
| Sequence: (in bold interface residues) | 1 MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSR 60 61 PPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQ 120 121 PLPAPETAHATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGG 180 181 TAGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQ 240 241 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRS 300 301 KDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPNPGLLSLTTSSVSDSLKPEQLDI 360 361 EEEGRPSTTFHVSGGPAQNAPPQQPPAPPSDALLDLHFPSDHLGDLGDPFHLGLEDILME 420 421 EEGMVGGLSGGALSPLRAASDPLLSSVSPAVSKASSRRSSFSMEEES |
| Interface Residues: | 242, 245, 246, 248, 249, 252, 253, 277, 279 |
| 3D-footprint Homologues: | 1a0a_B, 4zpk_A, 7ssa_L, 6g1l_A, 5eyo_A, 1am9_A, 7xi3_A, 5nj8_D, 4h10_A, 7d8t_A, 5gnj_I, 8osl_O, 5v0l_A, 4h10_B, 7f2f_B, 5i50_B, 2ypa_A, 8osl_P, 2ypa_B, 1an4_A, 5nj8_C, 5v0l_B |
| Binding Motifs: | M0174_1.02 rrTCACGwGg |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.