Transcription Factor
| Accessions: | Q4H3W8 (JASPAR 2024) |
| Names: | Q4H3W8_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4H3W8 |
| Length: | 683 |
| Pfam Domains: | 98-149 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MAFYAKTLENISNIPATDYRQRERNLSECTGSVASAANVYVSAPVTTCQPGSTGSINLPT 60 61 LAPIQGNEILVNVSDDLDIDPVMGGAVYGQREQDRKVKREIANSNERRRMQSINAGFKSL 120 121 KTILPHTDGDKLSKAAILQQTAEYILQLESDKLRLLNQNEKLRRAYSECMCTASKHKTLL 180 181 YETLEKDEGIGSPREEDMEDVRRDAIEVRQQLDKERRLRMLLEDQVRDLEAQIYPEKLRE 240 241 LVNSVSTQQQQQHRPSKRVDDIGGQMEAEEKGNILPQLKINVASNRQNVVCPNDNTVTTT 300 301 VLTSPPRLQSPIRYQVHPKLPPLQTAVETVPYAGLCVTVDNTEETLTPTQSQSNNYCGSL 360 361 PRSRQPLKKRAVELTESDQSAPCKVAKVTTQAPTSKPIQPIPSNKPMKMVAVKTPDSQNL 420 421 PIPKPDPQILYPNRPCVPPTYMNLNPHPNNQAWSEQKTPQVMATPTQTNFHITVASKPQI 480 481 PSTQYVVQPAIQMVHPPKEMTLNQLNNVSSLSMTLTQLNALSTACTRPNLPSHNAVPATR 540 541 VQAQYLPLVAMDTVLGRRSERRISSATTDSVVSDEEKHELLEDPQNEDNIPTIKLPAVVG 600 601 RSRSDPGPALTVENHPDIPCSGSSTATVSVLSSGPGSPPVIRHIDAVATRRNLETIVQAI 660 661 DHLEQQARRNSQDQQPTEESTNT |
| Interface Residues: | 99, 101, 102, 103, 105, 106, 109, 110, 134 |
| 3D-footprint Homologues: | 8osb_B, 7z5k_B, 2ypa_A, 1an4_A, 6g1l_A, 1am9_A, 8ia3_B, 5eyo_A, 7d8t_A, 5i50_B, 2ql2_D, 5gnj_I, 7ssa_L |
| Binding Motifs: | MA1843.1 gwwrawCAGCTGathawcar MA1843.2 awCAGCTGat |
| Publications: | Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D, Degnan BM, Vervoort M. Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol : (2007). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.