Transcription Factor
| Accessions: | D9HNU1 (JASPAR 2024) |
| Names: | D9HNU1_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | D9HNU1 |
| Length: | 672 |
| Pfam Domains: | 122-222 B3 DNA binding domain 248-332 Auxin response factor 462-632 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MASAGVAGCSGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQ 60 61 HLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQSEPTSPDSEPPEPERCNVY 120 121 SFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMTQNPPWQELLAKDLHGNEWHFRHIFRG 180 181 QPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHNM 240 241 HLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKVSVGMRFKMRFEGDE 300 301 SPERRLSGTIIGLGSMPANSTSPWANSDWRSLRVQWDEPSAILRPDRVSPWELEPLDATN 360 361 PQPPQPHLRNKRARPPALLSIAPELPQVFGFLKSPAEPAQAFSFSRPQQTQELYHSNPSS 420 421 IFSSSLNVGFSSKNDRSTPINSHLYWTMRQTRTESYSASINKAPTEKKQESATSGCRLFG 480 481 IEIGSAVSPVATVASVGQDQPPALSVDVESDQLSQPSNANKTDAPVASSERSLNESESRQ 540 541 VRSCTKVIMQGMAVGRAVDLTRLDGYADLHRKLEEMFDIQGELSANLKKWKVIYTDDEDD 600 601 TMLVGDDPWNEFLRMVKRIYIYSYEEAKSLTRKAKPPVVGDTIKPDPNKLPPESDVPHDS 660 661 NNNAPVAADYQD |
| Interface Residues: | 129, 134, 135, 136, 138, 179, 181, 182, 184, 400 |
| 3D-footprint Homologues: | 7et6_A, 6ycq_A, 8oj2_A, 6ymg_A |
| Binding Motifs: | MA1687.1 CGgGGGACAyGTCsgg |
| Binding Sites: | MA1687.1.1 MA1687.1.10 / MA1687.1.19 / MA1687.1.20 / MA1687.1.9 MA1687.1.10 / MA1687.1.11 / MA1687.1.18 / MA1687.1.19 MA1687.1.11 / MA1687.1.12 / MA1687.1.14 / MA1687.1.17 / MA1687.1.2 / MA1687.1.3 MA1687.1.13 MA1687.1.12 / MA1687.1.14 MA1687.1.13 / MA1687.1.15 MA1687.1.16 MA1687.1.17 / MA1687.1.18 MA1687.1.1 / MA1687.1.2 MA1687.1.4 MA1687.1.5 MA1687.1.3 / MA1687.1.6 MA1687.1.5 / MA1687.1.7 MA1687.1.7 / MA1687.1.8 MA1687.1.8 / MA1687.1.9 MA1687.1.15 / MA1687.1.16 MA1687.1.20 MA1687.1.4 MA1687.1.6 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.