Transcription Factor
| Accessions: | T140825_1.02 (CISBP 1.02) |
| Names: | PK06791.1, T140825_1.02; |
| Organisms: | Cannabis sativa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:SBP |
| Length: | 1059 |
| Pfam Domains: | 199-276 SBP domain |
| Sequence: (in bold interface residues) | 1 AYLVLDFCCIGLSQLRSVLFFSSSNILEWNFNCWIWIFLVYLWFSSMEARFGGEPRHFFG 60 61 MSSADLTTVRKRTMEWDLNQWKWDGDLFIASSVNPAVPSEGMGRQFFPAGGSCNSNTSSS 120 121 CSDEGNLVIEKGKRELEKRRRDNTVEDENLNDGTGNLTLMLGGRGHHLHQQASEREMVNW 180 181 EGNSGKKTKFVGGTSSRAICQVEDCGADLTNAKDYHRRHKVCEMHSKAVKALVGNVMQRF 240 241 CQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNPDTAANGNSLSDDQTSGYLLISLLR 300 301 ILSNMHSNKPDQSTEQDLLSHLLKSLANQTSEQGGKSVAGLLRDPQNLLTDGTSVGNSEV 360 361 VSAFLSNGSQGPPRPTKQNHAVSISEIPQQDIHLHNTNGGSVQATSEKPSIINSPPSYSE 420 421 ARDSTAGHSKMNNFDLNDIYIDSDDGVEDPERSSPPTNLVTSSLDCPSWVQQDSHQSSPP 480 481 QTNSDSASAQSPSSSNGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDIESY 540 541 IKPGCIILTIYLRQSDSAWEELCYDISSKLSRLLDVSDDTFWSTGWTFIRVQHQIAFVCN 600 601 GQVIVDTSLPLRSSNCSKIVSIKPIALPASKKAQFLVRGTNLVRPTTRLFCALEGKYLVQ 660 661 EATHELMDGVDNSEHDEHCISFSCPIDVTNGRGFIEIEDQGLGNSFFPFLVAEEDVCSEI 720 721 RVLESVLEYTESHAVVGGIGKPESYNQAMDFIHEMGWLLHRSQLRSRLGELDPNAEPFSL 780 781 KRFKWIMEFSVDHDWCAVVRKLLDILIDGSIGEGEDRSLDLALSEIGLLHRAVRRNSKAL 840 841 VEALLKYAPKDLSKLESEEKSATHGPSSNFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDA 900 901 LTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYTYIRLIQRKINKNSGSGHVVVDIPGD 960 961 QKHCGANQKQNELANTTTATTTFEIGRSEQRRIQRPCGLCDRKLAYGTSRRSVVYRPAML 1020 1021 SMVAIAAVCVCVALLFKSSPEVLYVFQPFRWEMLEFGTS |
| Interface Residues: | 776, 778, 782, 891, 925, 942, 943, 945, 946, 947, 949 |
| 3D-footprint Homologues: | 7qd4_A, 8ipp_B, 8qlp_B, 8bzm_E |
| Binding Motifs: | M1559_1.02 ttGTACGgh |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.