Transcription Factor
| Accessions: | T05406 (AthalianaCistrome v4_May2016), Q9S9Z2 (JASPAR 2024) |
| Names: | AT1G34670, MYB93, T05406;, AtMYB93, Myb-related protein 93, MYB93_ARATH, Transcription factor MYB93 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 365 |
| Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-76 Myb-like DNA-binding domain 67-112 Myb-like DNA-binding domain 70-116 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60 61 LRPDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMG 120 121 IDPVTHQPRTDLFASLPQLIALANLKDLIEQTSQFSSMQGEAAQLANLQYLQRMFNSSAS 180 181 LTNNNGNNFSPSSILDIDQHHAMNLLNSMVSWNKDQNPAFDPVLELEANDQNQDLFPLGF 240 241 IIDQPTQPLQQQKYHLNNSPSELPSQGDPLLDHVPFSLQTPLNSEDHFIDNLVKHPTDHE 300 301 HEHDDNPSSWVLPSLIDNNPKTVTSSLPHNNPADASSSSSYGGCEAASFYWPDICFDESL 360 361 MNVIS |
| Interface Residues: | 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 102, 105, 106, 109 |
| 3D-footprint Homologues: | 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A |
| Binding Motifs: | M0525 rwwwbyyyAMCwAmY M0528 kwkkkddwrkTwGKTrrrmhw MA2025.1 yytACCAAACchwa MA2025.2 tACCAAAC |
| Binding Sites: | MA2025.1.1 MA2025.1.10 MA2025.1.11 MA2025.1.12 MA2025.1.13 MA2025.1.14 MA2025.1.15 MA2025.1.16 MA2025.1.17 MA2025.1.18 MA2025.1.19 MA2025.1.2 MA2025.1.20 MA2025.1.3 MA2025.1.4 MA2025.1.5 MA2025.1.6 MA2025.1.7 MA2025.1.8 MA2025.1.9 MA2025.2.13 / MA2025.2.18 / MA2025.2.19 / MA2025.2.20 / MA2025.2.3 / MA2025.2.7 MA2025.2.10 / MA2025.2.11 / MA2025.2.6 MA2025.2.8 / MA2025.2.9 MA2025.2.5 MA2025.2.1 MA2025.2.12 MA2025.2.14 MA2025.2.15 MA2025.2.16 MA2025.2.17 MA2025.2.2 MA2025.2.4 |
| Publications: | To A, Joubès J, Thueux J, Kazaz S, Lepiniec L, Baud S. AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. Plant J 103:660-676 (2020). [Pubmed] |
| Related annotations: | PaperBLAST |
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