Transcription Factor
| Accessions: | T12964 (AthalianaCistrome v4_May2016), Q9SN24 (JASPAR 2024) |
| Names: | AT3G49930, T12964;, C2H2 and C2HC zinc fingers superfamily protein, Q9SN24_ARATH, Zinc-finger-like protein |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:C2H2 |
| Length: | 215 |
| Pfam Domains: | 94-118 C2H2-type zinc finger 148-173 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MALDTLNSPTSTTTTTAPPPFLRCLDETEPENLESWTKRKRTKRHRIDQPNPPPSEEEYL 60 61 ALCLLMLARGSSDHHSPPSDHHSLSPLSDHQKDYKCSVCGKSFPSYQALGGHKTSHRKPV 120 121 SVDVNNSNGTVTNNGNISNGLVGQSGKTHNCSICFKSFPSGQALGGHKRCHYDGGNGNSN 180 181 GDNSHKFDLNLPADQVSDETIGKSQLSGEETKSVL |
| Interface Residues: | 94, 104, 105, 106, 107, 108, 110, 111, 117, 127, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 143, 159, 160, 161, 162, 163, 164, 166 |
| 3D-footprint Homologues: | 2kmk_A, 1g2f_F, 8cuc_F, 7eyi_G, 5kkq_D, 6u9q_A, 2lt7_A, 1mey_C, 6wmi_A, 4x9j_A, 6e94_A, 7ysf_A, 2i13_A, 7w1m_H, 6ml4_A, 7txc_E, 5v3j_F, 5yel_A, 8ssq_A, 7y3l_A |
| Binding Motifs: | M0336 GAAATCw UN0355.1 yhTACCTAAyw UN0355.2 TACCTAA |
| Binding Sites: | UN0355.1.1 UN0355.1.10 UN0355.1.11 / UN0355.1.6 UN0355.1.12 / UN0355.1.7 UN0355.1.13 UN0355.1.14 UN0355.1.15 / UN0355.1.8 UN0355.1.16 / UN0355.1.9 UN0355.1.10 / UN0355.1.17 UN0355.1.11 / UN0355.1.18 UN0355.1.12 / UN0355.1.19 UN0355.1.2 UN0355.1.13 / UN0355.1.20 UN0355.1.1 / UN0355.1.19 / UN0355.1.3 UN0355.1.4 UN0355.1.2 / UN0355.1.5 UN0355.1.3 / UN0355.1.6 UN0355.1.7 UN0355.1.8 UN0355.1.4 / UN0355.1.9 UN0355.1.14 UN0355.1.15 UN0355.1.16 UN0355.1.17 UN0355.1.18 UN0355.1.20 UN0355.1.5 UN0355.2.18 UN0355.2.1 / UN0355.2.10 / UN0355.2.16 / UN0355.2.17 / UN0355.2.19 / UN0355.2.6 UN0355.2.11 UN0355.2.12 / UN0355.2.15 / UN0355.2.7 UN0355.2.13 / UN0355.2.3 / UN0355.2.4 / UN0355.2.9 UN0355.2.14 / UN0355.2.2 / UN0355.2.5 UN0355.2.20 / UN0355.2.8 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.