Transcription Factor
| Accessions: | T119975_1.02 (CISBP 1.02) |
| Names: | rca-1, T119975_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT |
| Length: | 324 |
| Pfam Domains: | 9-54 Myb-like DNA-binding domain 12-69 Myb-like DNA-binding domain 62-103 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSNMPDQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGTRTPKQCRERWHQNLKPGLN 60 61 HGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRKKNQLRRQSAPR 120 121 RVSASDVLRSSPGQLPRAHMQRPIRYPQDIYTGSRRPSSPSSFNDSLHHRVHESIEWFPS 180 181 RPQQQQQQQQQQARCTTPFTSFYPPSHAFPTTDGYQDGSDGPTGSTLRLLTPPTSRRLAP 240 241 FSTLPSPTTSSIGDLDEFDRRQLAAFAPPAAYRRPSLPFPQQSSMGYLPSATEYLPTAPS 300 301 SPIALIQRDEKNHARIPVTSLLCS |
| Interface Residues: | 9, 43, 44, 45, 46, 48, 49, 52, 53, 54, 95, 96, 99, 100, 103, 104, 105 |
| 3D-footprint Homologues: | 1vfc_A, 1w0t_A, 2kdz_A, 5eyb_B, 6kks_A, 1mse_C, 3osg_A, 3zqc_A, 7xur_A |
| Binding Motifs: | M1366_1.02 asAmCGkTar |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.