Transcription Factor
| Accessions: | T097741_1.02 (CISBP 1.02) |
| Names: | ENSTNIG00000018555, T097741_1.02; |
| Organisms: | Tetraodon nigroviridis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 509 |
| Pfam Domains: | 34-230 PBC domain 232-291 Homeobox domain 250-288 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MDDQTRMLTGLTGLAGLQQADVGDPDSVRKQQSLGQPQQDIGDILQQIMAITDESLDEAQ 60 61 ARKHALNCHRMKPALFSVLCEIKEKTVLSIRGVQEEDPPDPQIMRLDNMLLAEGVSGPEK 120 121 GGGSAAAAAAAAAAGGSPTDSSIEHSDYRAKLAQIRQIYHAELEKYEQACSEFTNHVMNL 180 181 LREQSRTRPISPKEIERMVAIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFNK 240 241 QATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEA 300 301 NLYAVKTAVDAANVSAQASQANSPATPNSGSYSLSHTGDAYLGLHSLNGEGLSIAPSLQQ 360 361 QVDTLHRATHLTAGYEELSGSGLYTPHCLDVSTKRRLWRDRLRTGAIPSTILGLIGFVFY 420 421 VGRLTAGRTPPTPLRSPPLLVLPAAFTQTPPTDSVRSCCHSTPAVVFPDYPPPRSPHFSL 480 481 SHTLSSAATQGDACISLALTVLEHRTAER |
| Interface Residues: | 177, 193, 194, 196, 197, 200, 201, 205, 211, 215, 232, 233, 234, 235, 236, 276, 277, 279, 280, 283, 284, 286, 287, 288, 291 |
| 3D-footprint Homologues: | 2p7c_B, 1au7_A, 8g87_X, 3d1n_M, 5zfz_A, 6fqp_B, 1puf_A, 8ejp_B, 6a8r_A, 3cmy_A, 1zq3_P, 1jgg_B, 3lnq_A, 2lkx_A, 6m3d_C, 2ld5_A, 7psx_B, 4j19_B, 2r5y_A, 9b8u_A, 1b72_A, 5zjt_E, 8osb_E, 5jlw_D, 4cyc_A, 1puf_B, 8ik5_C, 7q3o_C, 1le8_A, 1fjl_B, 6es3_K, 4xrs_G, 8pmf_A, 1le8_B, 5flv_I, 1mnm_C, 4qtr_D, 3a01_E, 2d5v_B, 1k61_B, 6fqq_E, 5hod_A, 3rkq_B, 1du0_A, 4xrm_B, 2hdd_A, 8eml_B, 2hos_A |
| Binding Motifs: | M1082_1.02 cwCRTCAA |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.