Transcription Factor
| Accessions: | T074596_1.02 (CISBP 1.02) |
| Names: | T074596_1.02;, TET1 |
| Organisms: | Monodelphis domestica |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:CxxC |
| Length: | 2068 |
| Pfam Domains: | 478-517 CXXC zinc finger domain 1501-1977 Oxygenase domain of the 2OGFeDO superfamily |
| Sequence: (in bold interface residues) | 1 MALTRHGRSSKLVRKEDLSKKKTSQLNKASKIMTKKVTLVKALSTEKLQQLMPESNNVKK 60 61 KSKTKSPAPTRSLLTRAAAARRSLDQTDVLFQNPESLSCNGFTMCLRSTSLIRRLSQPPV 120 121 VITRPGKIPPSKTLEKENKCENGVLAVSKEHIVETEKETDQSQEKVISTDNEEDPIVVTS 180 181 DALPSKENGQAVEDPITSITTHSSLPTQTSETLEENCKCEGQFFEKLLNDSSDTVRTLVQ 240 241 DSMPIPLFNNAPHTVTSKPNLNMYLEDLGSRVKSLKLNDSSLEPMKENLDSHQSSCYKGK 300 301 PELDFQNIMVPSGSIFPTSFANYLLAGSDQQEPIHGSLDQPVTQSTASDPLGGHGANQTL 360 361 TLDSGQIASSFPNFEKSLVAFTKDILAQEMHKPQDTSLLSELPSNNHSFKIVPESGLKKE 420 421 SNSLSEDPKLASSDLGQLDGQSSQISETNVISVSMAFSNTASYSYPFSYTTLLPTLEKKK 480 481 RKRCGVCEPCQKKENCGECVYCKNRKYSHHVCKMRKCEELKKKPMVIVPLEVIKENKRPQ 540 541 REKKPKVFKIHLDNKLVNGPRSESMENSKCGNDEKQRLKLNQNILENVQTTEEDTMTGIE 600 601 VEKWSENKKSPLTIHVKGDISGPVTETENLKNSEDNEKKTPLSDLIEPPKLFAQTVKNGI 660 661 KNVYYSPADADVSLKKVKFETNANLIDHDTESNPNPSLGNTTSSDNRAGALVPGIYHAHL 720 721 KKEDNSLVIQKTDSTCHSTQYPTDTFLNHNISAQENQSHIVTWEKRFDQGEVPESKPNRE 780 781 LAQDNSLVQPSLLTLMRDRRLTLEQVVAIEALTQLSEAPSENSSPSKSDKNEETTNLTTN 840 841 LLHSCKAILCSVGSSAGKDFQDPNLKIDSVVLPPCPSLEKKTSRKPVLYNGQNNSKYPST 900 901 LMTNHNTSKTHASSRVTKSGLITEPSSNSSRNHSNKEIVLQGRITVGRCAKTSHGLHTSS 960 961 KLAFCRQLQESTGKRFDSKNNLSYKNTPHSQIEEDVAAQLTQLASIIESNNAKREEKEGT 1020 1021 KTLSSLESHDAQQKYNQEQSSFQEKLPVPVQNNRGSLLAKQKPSSHKKGKSASWKQRLKK 1080 1081 MPPAKNNLQNDQSERERLAWQYGKFHDLWVGSKLRRLGYISSREFHATMIEQNPLLTKVP 1140 1141 KPLTQSTLSSPHKKVFLPLTQIKFHRHLPESAQEKMKEKLFDALSLFQLCSKSPLSRPSS 1200 1201 NVQVFTENGHNSQVQQSVNVNQSLNQNSQKDGATADDDQTQFQQDVEEPPRSQRLQSLPS 1260 1261 PCCDTQVPGTIKTLRNENAACPGGRTASGLGVVTSHGATSDLGSSPGKNTLSCFLESPMT 1320 1321 FLDTPTKNLLDTPTKKGPSELPSCSCVEQIIEKDEGPYYTHLGTGPSVAAVREIMEARYG 1380 1381 EKGRAIRIEVVVYTGKEGKSSQGCPIAKWVIRRSSDEEKLLCLVRQRAGHHCQTAVIVIL 1440 1441 ILAWEGIPHLLADTLYQELTQSLNKYGCPTTRRCALNEDRTCACQGMDPETCGASFSFGC 1500 1501 SWSMYFNGCKFARSKNPRRFRLIADDPKEEEILESNLQSLATDVAPVYKKLAPDAFRNQV 1560 1561 ENEPLGPDCRLGRKDGRPFSGVTACIDFCAHAHKDTHNMNNGSTVVCTLTKEDNRSVGVV 1620 1621 PKDEQLHVLPLYKISQTDEFGTKEGLEAKIKTGAIQVLTAFPREVRMLAEPVKATKKKKV 1680 1681 DIRRVQTEKPGQVPKKHPPPVKLKNGPLEAPNRAPQPLGNRTEALQPEIKSEPPDSHFNL 1740 1741 HSVANTTSYSWIKSIHHPLKGTNLPLNSPLTPVSGLATTSFQNDSEISYGFSDQGSVPPW 1800 1801 TVVSTKYSGANTVAKECPGLLLNAKPASVPGVASPMTDPQIHADLPTGPVEHLVSNMATF 1860 1861 PPPSLLSPVPQIPSLDDSTPAKSDYEHKTAAPLSSATEQTPSDELTESADSEERSEEMWS 1920 1921 DSEHNFLDDNIGGVAVAPSHGSVLIECARRELHATTPIRKPNRNHPTRISLVFYQHKNLN 1980 1981 EPRHGWAVWEAKMAERAREKEREAERLATENANNQKTKQPTESPEIFCEENELNQIPSRK 2040 2041 ALTVTHDNVITVSSYALTQVAGPYNHWV |
| Interface Residues: | 509, 510, 1457, 1458, 1461, 1480, 1502, 1504, 1505, 1506, 1513 |
| 3D-footprint Homologues: | 3qmd_A, 1hcq_E, 4oln_B, 6kw4_Y, 5deu_A |
| Binding Motifs: | M0612_1.02 gGGGGGGa |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.